VCU Bioinformatics and Bioengineering Summer Institute
Virginia Commonwealth University
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Markov models and their use in identifying
gene boundaries (June 14 - June 17)
(Computer Lab, Life Sciences Bldg, Rm 104)

Time: Mon-Wed, June 14 - June 17, 9:00 am - noon
Place: Bioinformatics Computer Core Lab (Rm 104), Life Sciences Bldg
Organizers: Jeff Elhai
Audience: Primarily 1st year students

Scenario

Schedule
Mon June 14, 9am
 Introduction to orthologs and Markov models
Tue June 15 ** CHANGE OF PLAN **
** Tuesday rescheduled to Wednesday **
Wed June 16, 9am Making a model of DNA sequences
Thu June 17, 9am Using models of DNA sequences
Matt Berginski (BBSI 2004/05) presents: Besemer J, Lomsadze A, Borodovsky M (2001). GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions. Nucl Acids Res 29:2607-2618.
















Problem set

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