VCU Bioinformatics and Bioengineering Summer Institute
Virginia Commonwealth University
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Research Simulation
Genes Determining Plant-Cyanobacterial Symbioses

Time: Wed June 11, 9:00 am - 11:30 pm
          Thur June 12, 9:00 am - 11:30 pm
Place: Bioinformatics Computer Core Lab (Rm 104), Life Sciences Bldg
Organizers: Wan-Ling Chiu, Jeff Elhai, and Billy Budd
Audience: Primarily 1st year students

Schedule
 Wed June 11, 9am
Rationale for transcript sequencing
- The value of plant/cyanobacterial symbioses
- Sequencing to find symbiosis-specific genes
Joe Alvin presents:
  The Life and Times of Jason Papin
Before coming: Please read (very brief)
  The Issues of Nitrogen
      (from the International Nitrogen Initiative)
Presentation: Genes required for symbioses
 Thu June 12, 9am From sequence to function
- Normalization
- Sequencing and assembly
- Gene finding
- Gene function
Natasha Williams presents:
  Vera JC et al (2008). Molec Ecol 17: 1636-1647
  Rapid transcriptome characterization for a
  nonmodel organism using 454 pyrosequencing
.
Before coming: Please read
  Cheung F et al (2006). BMC Genomics 7:272
  Sequencing Medicago truncatula expressed
  sequenced tags using 454 Life Sciences
  technology

Notes on Chueng et al (2006)
Questionnaire

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