Time: Wed, Thu, Mon June 14 - June 19, 9:00 am - 11:30
Place: Bioinformatics Computer Core Lab (Rm 104), Life Sciences Bldg
Organizers: Gail Christie and Jeff Elhai
Audience: Primarily 1st year students

Scenario 1 (phage)         Scenario 2 (Blast)

Schedule

Wed June 14, 9am	Identification of NucC-regulated genes in Serratia marcescens (Background) Notes           Presentation
Thu June 15, 9am	Computational search for gene sequences: The truth about Blast - Link: National Center for Biotech Information - Link: Serratia marcescens Db11 genome site - Tour: Computational search for gene             sequences - Notes: Alignment of pairs of sequences - Questionnaire - Worksheet: Smith-Waterman worksheet - Summary: Smith-Waterman rules
Mon June 19, 9am	Experiments with a Visible BlastN - Notes/Problem set: Data aggregates - Notes: The Visible BlastN - Notes: Blast scoring - Questionnaire: (coming) Late breaking news! Billy Budd presents: Regulation of the Serratia marcescens extracellular nuclease: positive control by a homolog of P2 Ogr encoded by a cryptic prophage. Jin S, Chen Y, Christie GE, Benedik MJ (1996). J Molec Biol 256:264-278.
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