VCU Bioinformatics and Bioengineering Summer Institute
Virginia Commonwealth University
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Research Simulation
Cellular automata modeling of
signaling and metabolic pathways

Time: Mon-Tue, June 27 - June 28, 9:00 am - 11:30
Place: Bioinformatics Computer Core Lab (Rm 104), Life Sciences Bldg
Organizers: Monty Kier and Danail Bonchev
Audience: Primarily 1st year students

Schedule
Mon June 27, 9am
Introduction to Cellular Automata

Reading: Cellular Automata.
Chapter 2 in Cellular Automata Modeling of Chemical Systems. Kier LB, Seybol PG, Cheng CK, eds. (in press).
Tue June 28, 9am Application of Cellular Automata

Reading: Modeling Biochemical Networks: A Cellular Automata Approach.
Kier LB, Bonchev D, and Buck GA (2005).
Chem Biodiversity 2:233-243

Program: CASim2: Runs cellular automata simulations

Data: apopt5_7.inf     apopt5_7.prb
          apopt5_7.rpt     apopt5_7.sim
          apopt5_7.str     apopt5_7.typ    

Presentation

Sterling Thomas presents:
Modeling directed ligand passage toward enzyme active site by a 'double cellular automata' model. Marashi S-A and Behrouzi R (2005). Biochem Biophys Res Commun 333:1-4.


















 





 

 

 

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