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Sun 15 June
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Personal web pages replace provisional pages
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Mon 16 June
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Research proposals for summer on personal web pages
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Tue 17 June
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David Black presents:
Molecular dynamics and thermodynamic of protein-RNA interactions: Mutation of a conserved aromatic residue modifies stacking interactions
and structural adaptation in the U1A stem loop 2 RNA complex
Dukagjin M. Blakaj, Kevin J. McConnell, David L. Beveridge, and Anne M. Baranger
J Am Chem Soc (2001) 123:2548-2551 (PDF) (HTML)
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Tue 17 June
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Lyndsey Schutte presents:
Expression of the Anabaena hetR gene from a copper-regulated promoter leads to heterocyst differentiation under repressing conditions
William J. Buikema and Robert Haselkorn
Proc Natl Acad Sci USA (2001) 98: 2729-2734 (PDF) (HTML)
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Wed 18 June
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Responses to at least three problems from
Problem Set for Simulation #1
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Wed 25 June
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Danielle King presents:
Molecular genetics of SaPI1 - a mobile pathogenicity island in Staphylococcus aureus
Alexey Ruzin, Jodi Lindsay, Richard P. Novick (2001)
Molec Microbiol 41:365-377 [HTML]
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Wed 25 June
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Robert Mullowney presents:
Role for a Phage Promoter in Shiga Toxin 2 Expression from a Pathogenic Escherichia coli Strain
Patrick L. Wagner et al (2001)
Journal of Bacteriology 183:2081-2085 [HTML].
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Tue 1 July
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Emily Colby presents:
Identification of Vaccine Candidates Against Serogroup B Meningococcus by Whole-Genome Sequencing
Mariagrazia Pizza et al (2000)
Science 287:1816-1820 [HTML]
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Tue 1 July
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Peter Likarish presents:
On the structural complexity of a protein
Pierre-Yves Calland (2003)
Protein Eng 16:79-86 [HTML]
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Wed 2 July
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Responses to at least three problems from
Problem Set for Simulation #3
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Thu 3 July
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Gaurav Rana presents: The life and times of Brad Goodner
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Tue 8 July
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Luke Chaney presents:
Optimized multiplex PCR: efficiently closing a whole-genome shotgun sequencing project
Tettelin H, Radune D, Kasif S, Khouri H, Salzberg SL
Genomics (1999) 62: 500-507 [HTML].
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Wed 9 July
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Luke Chaney presents: The life and times of Hoda Khouri
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Wed 9 July
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Gaurav Rana presents:
Case Study: Visualization of Evolutionary Trees
Nina Amenta and Jeff Klingner (2002)
IEEE Information Visualization pp.71-74 [HTML].
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Thu 10 July
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Revised Research proposals for summer on personal web pages (after consultation with colleague)
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Tue 15 July
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Greg Ziegler presents:
Canine TCOF1; cloning, chromosome assignment and genetic analysis in dogs with different head types
Haworth EK et al (2001)
Mammalian Genome 12:622-629. [HTML]
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Tue 15 July
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Josh Grant presents: A biosensor that monitors cell morphology with electrical fields
Charles R Keese and Ivar Giaever (1994)
IEEE Eng. and Med. Biol. 401-408 (June/July)
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Tue 15 July
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David Black presents: The life and times of Anne Baranger
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Wed 16 July
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Responses to
Problem Set for Simulation #5
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Tue 22 July
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Rebecca Ganetzky presents:
Expression Profiling of Neural Cells
Reveals Specific Patterns of Ethanol-Responsive Gene Expression
Thibault Christelle et al (2000)
Molecular Pharmacology 52:1593-1600 [HTML]
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Tue 22 July
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Peter Likarish presents: The life and times of Bill Pearson
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Wed 23 July
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Chris Heffelfinger presents:
Systematic Variation in Human Gene Expression Patterns in Human Cancer Cell Lines
Douglas T. Ross et al (2000)
Nature Genetics 24:227-235 [PDF]
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Thu 24 July
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Greg Ziegler presents: The life and times of Deanna Church
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Tue 29 July
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Mark Delboy presents: Simulation of Human Benzo[a]pyrene Metabolism Deduced from the Analysis of Individual Kinetic Steps in Recombinant Yeast
Gautier J-C, Urban P, Beaune P, Pompo D (1996)
Chem. Res. Toxicol. 9:418-425 [HTML].
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Wed 30 July
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Tom Murphy presents: Genus-Specific Protein Binding to the Large Clusters of DNA Repeats (Short Regularly Spaced Repeats) Present in Sulfolobus Genomes.
Xu et al (2003). J Bacteriol 185:2410-2417. [HTML]
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Thu 31 July
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Rebecca Ganetzky and Chris Heffelfinger present: The life and times of Paul Fawcett
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Tue 5 August
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Research proposals for 2003/2004 academic year on personal web pages
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