VCU Bioinformatics and Bioengineering Summer Institute
Virginia Commonwealth University
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Research Simulation
Analysis of microarray data

Time: Mon July 16 - Tues July 17, 9:00 am - 11:30
Place: Bioinformatics Computer Core Lab (Rm 104), Life Sciences Bldg
Organizers: Jeff Elhai
Audience: Primarily 1st year students

Schedule
Mon July 16, 9am
Problems with microarrays
Notes: Introduction to microarrays
Questionnaire: On Introduction to microarrays
Resource: Stanford Microarray Database
Resource: t-test table
Resource: t-test calculator (from values)
Resource: t-test calculator (from means)
Data: 8 hr replicates from Ehira & Ohmori (2006)
Data: Data for t-test problem


Tues July 17, 9am
Finding significant differences in gene expression

Andy Whittam presents:
    Tusher VG, Tibshirani R, Chu G (2001).
    Significance analysis of microarrays
    applied to the ionizing radiation response

    Proc Natl Acad Sci USA 98:5116-5121
    (Please read before Tuesday)

Guided tour: Implementation of SAM in BioBIKE


More research simulations        More course web pages