Scoring and protein alignments

Topics

• Scoring sequence alignments (general)
• Aligning protein sequences with PAM and BLOSUM tables
• Practical Blast
• Danielle King Presents
• Robert Mullowney Presents

• Notes: Scoring and Protein Alignments
• Outside reading (optional): Bill Pearson's Tutorial on protein sequence comparison and protein evolution

• National Center for Biotechnology Information (home of BLAST)
• FastA (U. Virginia implementation)

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