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Home
Institution
Cedar Crest
College
Allentown,
Pennsylvania
E-mail:
mjsmith@cedarcrest.edu
Home
mentor
Richard
Kliman
E-mail:
rmkliman@cedarcrest.edu |
VCU
Lab
Massey Cancer
Center Addition
Department of Medicinal
Chemistry
Tel: (804)628-1956
VCU
mentor
Brad
Windle
Massey Cancer Center Addition Rm.
319
bwindle@VCU.edu
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Summer 2006
Research
Proposal
Identification
of Cell Function Pathways of Genes from 60 Human Cell Lines
Using Neural Networks and Random Forests
Research
article, presented
(June 29, 2006)
Functional
Discovery via a Compendium of Expression Profiles
- Hughes
et. al. 2000. Cell. 102:
109-126.
Research
presentation
(8 August 2006)
3rd
Annual VCU-BBSI Closing Symposium
Discovery
of Cell Function Pathway�Associations Based on Neural Network
and Random Forest Models
Academic Year
2006-2007
Research
Proposal
Cancer
Studies Using Bioinformatic Techniques
Research Proposal
Links
Pathway
Networks
Pathway
Probabilities
Pathway
Association Scores
Summer 2007
Summit on Systems Biology Poster
Cellular Pathway Mapping Using Gene Expression Profiles and Upstream Elements
Research
article, presented
(6 July 2007)
Why are Rhesus Macaques Resistant to HIV-1?
What About the Rest of Us?
-Paper: Kaiser, S., H. Malik, and M. Emerman. 2007. Restriction of an extinct retrovirus by the human TRIM5alpha antiviral protein. Science. 316: 1756-1758.
Research
article, presented
(27 July 2007)
Emerging Principles of Regulatory Evolution
-Paper: Prud'homme, B., N. Gompel, and S. Carroll. 2007. Emerging principles of
regulatory evolution. The national academy of sciences. 104: 8605-8612.
Research
presentation
(10 July 2007)Cellular Pathway Mapping Using Gene Expression Profiles and Upstream Elements
Final
Report
Cellular Pathway Networking Using Gene Expression Profiles and Transcription Factor Binding Sites |
Final Report
Links
Gene IDs and TFBS Data Part 1
Gene IDs and TFBS Data Part 2
Pathway Probabilities
Confusion Matrix
TFBS Importance Values
TFBS Gene Ontology
Prior research
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KL(phi)1 Bacteriophage, Creating a Southern Blot Probe
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Alchemy and the Black Plague: A Sociocultural Perspective
Characteristic interests and
activities
Drive-in
Movies
Painting
Photography
Forensics
The Dynamics
of Genomes
Home mentor's research
interests
Evolutionary Genetics
- Codon usage and
base composition among various organisms
- Population
genetics and the development of new species
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Conservation/Ecological genetics of the queen conch
My favorite research
articles
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