AlignACE 4.0 05/13/04
./AlignACE -i cparvum_hsp.fa -numcols 10 -gcback 0.27 
Parameter values:
 expect =      	10
 gcback =      	0.27
 minpass =     	200
 seed =        	1181608952
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	cgd2_20 	heat shock 70 (HSP70) protein
#1	cgd2_1800 	heat shock 40 kDa protein, putative
#2	cgd2_3230 	heat shock protein DnaJ Pfj2, putative
#3	cgd3_3440 	heat shock protein HSP70, mitochondrial 
#4	cgd2_3330 	APG-1 like HSP70 domain containing protein, signal peptide plus likely ER retention motif
#5	cgd3_3770 	Hsp90
#6	cgd4_3270 	heat shock 105kD; heat shock 105kD alpha; heat shock 105kD beta; heat shock 105kDa protein 1
#7	cgd6_1090 	DnaJ(hsp40)'DnaJ(hsp40)'
#8	cgd6_2650 	heat shock protein, putative
#9	cgd6_4970 	Hsp60; GroEL-like chaperone (ATpase), predicted mitochondrial
#10	cgd7_360 	heat shock protein, Hsp70
#11	cgd7_3670 	heat shock protein 90 (Hsp90), signal peptide plus ER retention motif

Motif 1
GATAAGTCAAGGGGGG	5	982	1
GGATAGAAGTGGGGGA	6	844	1
GAGGGTTAATGGGGGG	5	600	1
GGTATGGCAAGGGGGA	8	33	1
GTTGAGCGATGAGGGG	7	213	0
GTGTAGTGATGGGGGA	2	416	0
GAATTTCCGCGAGGGG	4	434	1
GAAAATTTAAGAGGGG	10	1173	0
ATGCAGAAGGGAGGGG	6	998	1
GAACAAACAAGGGGGA	4	317	0
GAGCGGTTGAGGGGCA	10	805	0
GAGACGATGTGGGGAA	11	102	1
GTATCGGTGAGACGGG	5	795	1
GTTTGGTTTTGGCGGG	10	151	0
GAACAGTATCGCGGGG	11	147	0
AGCTATTTATGAGGGG	0	1645	1
AGGAATAAGAGGGGGA	0	1114	1
GACGCTACATGAGGGA	0	1230	1
ATAAATTTAAGAGGGG	10	891	1
ATATAACTAAGAGGGG	5	756	1
AAAATATGGAGGGGAG	4	459	1
GATAAAATAAGAGGCG	6	543	0
CTTAAAATACGGGGGG	4	333	1
AAATTTTGATGGGGAG	1	150	0
GGAGAAAGTAGAGGAG	4	541	1
AGTAGATATTGGGGGA	2	122	1
GTTAAGTTTTGGTGGG	2	14	0
GTATCTATTTGAGGAG	10	385	0
GAATAAAATAGGGGCA	5	1016	1
AACTGGGGAGGGCGAG	2	303	0
ATCGCGAATTGAGGAG	4	154	0
ATAAGAAAACGAGGAG	0	1043	1
**   *  * ******
MAP Score: 38.6242

Motif 2
GGGGGGTTACGACGTTGT	5	610	1
GAGGGGAAAAGTCAATGT	0	1655	1
GGGGGGAAACTCAAGTTT	4	343	1
GGCGGGCTGGCACACATT	10	139	0
GGGGGGAAGTTTAAATTA	5	993	1
GAGGGGAATTCAAGTAAT	5	766	1
GGAGGGCGAGGGAAAAAA	2	295	0
GAAGGGTTTAGGCGCCAA	0	1368	1
GGCGGGAACATGCAGGAT	2	510	1
GAGGGGAGTTTCAGAATT	2	703	1
GGGGGGCCACTTTAAAAT	4	446	1
GAGGGGTTAAAACGCTTA	10	1161	0
GGCGGGAAAAGTTCTTGA	9	15	1
GCGGGGCGCGCATGAATA	11	135	0
GACGGGTACGCAAGTATT	5	805	1
GAAGGGTCAAGAAATAAT	6	716	1
GAGTGGTTTTGACACAGT	2	946	1
GAAGGGAGGGGTAAACCA	6	1003	1
GGAGGGGAGCCAAAACCT	4	466	1
GAGTGGGATAGCAGAAAA	5	630	1
GGGGAGAAAAGTCAATTT	1	138	0
GCAGGGTTGAGCTGAGAT	10	420	0
GGAGGGAGTGGATCTTAA	2	401	0
GGCGGGAACATATATTTA	2	85	1
GGGGGATATTGTAACAAA	6	854	1
GAGGGGTTGGATAACAAA	10	901	1
GAGGGGTTGTAGAAAAGA	7	201	0
TAGGGGGTTTGGCGGTAA	0	1446	1
GGGGGAATTTGTACTAAT	4	305	0
GCGTGGTTTTTGCAGTAT	6	528	0
GCCTGGTAACGCAATAAA	4	742	1
GAGTGGAATTTAAAGAGA	10	44	0
******    * **   *
MAP Score: 34.0338

Motif 3
GGGGGTAATTGTTGAGA	5	824	0
GGGGGAAAAATTTAGCG	8	43	1
GGGGGAAAATTTAAGAG	10	1176	0
GGGGGAAGAAATGAAAG	0	1124	1
GGGGGCCACTTTAAAAT	4	447	1
GGGGGGGAAGTTTAAAT	5	992	1
GGGGTTTGGCGGTAATT	0	1449	1
GGGGGAACCCTCTAAAA	6	695	1
GCGGGAACATGCAGGAT	2	511	1
AGGGGTTGTAGAAAAGA	7	201	0
GGGGGGAAACTCAAGTT	4	343	1
GAGGGGAAAAGTCAATG	0	1655	1
GGGGGATATTGTAACAA	6	854	1
AGGGGCAGGTGAGAGAA	5	1025	1
GCGGGGCGCGCATGAAT	11	136	0
GGGGGAGGGAGTGGATC	2	405	0
GCGGTTAGCTGCTAAAG	0	1001	1
TGGGGAGGGCGAGGGAA	2	299	0
GAGGGGAGTTTCAGAAT	2	703	1
GAGGGTTAATGGGGGGT	5	600	1
GGGGAGAAAAGTCAATT	1	139	0
AGGGGCAAAAGTTAAAA	10	795	0
GAGGGAAGTTTGAAATA	0	1240	1
GGGAGAAAATGAGGAAT	0	1103	1
GGGGAACTAAGGAGACG	11	112	1
TCGGGAAGATGGAAATA	2	361	1
GCGGTAAAATGGGAACA	6	1084	1
*****  *  *  ** *
MAP Score: 19.6839

Motif 4
ACAAAAAAAAAA	0	127	0
ATTAAAAAAAAA	0	190	1
ACAAGAAAAAAA	0	323	0
AAAAGAAGAAAA	0	461	0
ATAAAAAAAAAA	0	717	0
ATTAAAAAAAAA	0	752	0
AATAGAAGAAAA	0	872	0
AATAAAAAAAAA	0	1216	1
AAAAGAAAAAAA	1	104	1
AATAGAAAAACA	2	262	0
ATCAGAAGAACA	3	463	1
AAAAGAAAAAAA	5	65	0
AGCAAAAAAAAA	5	482	1
AGTAGAAGAACA	6	813	1
AAAAAAAGAACA	6	1141	1
ATTAAAAAAAAA	7	234	1
AAAAAAAAAAAA	7	257	1
AACAAAAAAAAA	7	381	0
ATAAGAAAAAAA	7	467	1
ATGAAAAAAAAA	9	44	0
ATCAGAAAAAAA	9	95	0
ATTAAAAGAAAA	10	301	0
AGGAGAAAAAAA	10	378	0
*  *********
MAP Score: 18.8244

Motif 5
GGGGGGCCACTTTAAAATATGG	4	446	1
GGGGGGTTACGACGTTGTTAGA	5	610	1
GAGGGGTTGGATAACAAATTAA	10	901	1
GAGGGCGAGGGAAAAAAGGTGG	2	290	0
GGGGGGGAAGTTTAAATTAAAA	5	992	1
GGGGGGAAACTCAAGTTTTCAG	4	343	1
GAGGGGGAAGAAATGAAAGAAA	0	1122	1
GGGGGTTTGGCGGTAATTCTGA	0	1448	1
GGGTGGAGAGCGGTTGAGGGGC	10	806	0
GAGGGAGTGGATCTTAATTTGA	2	396	0
TAGGGGCAGGTGAGAGAAGAGA	5	1024	1
GAAGGGAGGGGTAAACCATTAA	6	1003	1
GAGGGGTTGTAGAAAAGACGAA	7	197	0
CAGGGGGAACCCTCTAAAAGAG	6	693	1
GAGTGCATGCATGAAAATTTGC	5	137	1
GAATGGGAAGAGTAGTAGTAGG	0	1161	1
GAGTTGCAGGGTTGAGCTGAGA	10	421	0
CAGGGCTAACTTTAACAAGAGC	6	51	1
******  **          **
MAP Score: 13.5139

Motif 6
TAAGAGGGGGA	0	1119	1
GATGGGGAGAA	1	148	0
GCAGGCGGGAA	2	82	1
GAGGGCGAGGG	2	301	0
GAGGGAGTGGA	2	407	0
ACAAGGGGGAA	4	316	0
TACGGGGGGAA	4	340	1
GCGAGGGGGGC	4	442	1
TATGGAGGGGA	4	463	1
TAAGAGGGGAA	5	763	1
TCAAGGGGGGG	5	988	1
GCAGGTGAGAG	5	1029	1
GAAGTGGGGGA	6	849	1
GCAGAAGGGAG	6	1000	1
GAGGGGTTGTA	7	208	0
GCAGGGAAGAA	7	510	1
GCAAGGGGGAA	8	39	1
GCAGGGTTGAG	10	427	0
GCAAGTGGGAA	10	674	0
GCGGTTGAGGG	10	808	0
GAGGGGTTGGA	10	901	1
GATGTGGGGAA	11	107	1
** ********
MAP Score: 13.2764

Motif 7
TAAAAGAAATAAAAGG	0	236	0
GTAAATGGAAAAAAGG	0	1089	1
AAAAGGAGATAGAAGG	2	239	0
ATAAAGAGGAAAAAGG	2	723	1
GAACGGAATTAAAAGG	2	787	1
TTAAATTTTAAAAAGG	3	338	0
GTACTTTAATAGAAGG	3	579	1
GAAACTGAGAATAAGG	4	568	0
GAGCCTGTACAGAAGG	4	719	1
GGACATAAAAAAAAGG	5	236	1
GTAAATATTCAGCAGG	6	39	1
GAAATATTGAAAAAGG	6	421	0
GCAAAGAATCAAAAGG	6	496	0
GTAATTAAAGAAAAGG	9	66	1
GAGAGTCAAAAAAAGG	10	232	1
GTAAAGCTCTAGAAGG	10	268	0
GTAAGTTATTAAAAGG	10	320	0
* ** *    ******
MAP Score: 12.9883

Motif 8
ATGAAGAATAATGGTC	0	1537	1
AGAAGGAATAAAGGCC	4	729	1
ACTGAGAATAAGGGAA	4	565	0
ATGGTAAATAAAGGAC	6	586	1
ATTAAAAATAATGGCC	0	736	1
ATAAAAAAAAATGGAC	0	1217	1
AAAGGAAATAAAGGTA	5	247	1
AAGAGAAAGAATGGGA	0	1153	1
AATATAAACAAAGGAA	5	41	1
AACAGGAAAAGTGGTA	2	893	1
ATAATAAACAGGGGGA	6	685	1
AAAGTAAAAAAAGAAC	6	1136	1
AAAAGAGAGAAGGGTC	6	708	1
AGTAGGAAGAAGGAAA	0	1177	1
ACAAAGAAAAAGGAAA	2	194	0
AGAGTAAAAAAGGAGA	2	246	0
AATATGGAAAGAGGTC	3	197	1
AAAAGAAAGAAAGAAA	0	267	1
AGAAAAAAAAATGAGA	10	371	0
ACAAAAAAAAAAGAAA	7	376	0
ATTAAAAAAAAAGAAA	5	69	0
ATAGTAAAGACCGGAA	5	904	1
ATGGAAAAAAGGGAGA	0	1093	1
*  * *** ** ** *
MAP Score: 11.8825

Motif 9
TTTGGCGCCAAT	0	354	1
TTAGGCGCCAAA	0	1375	1
TTTGGCGGTAAT	0	1453	1
TATGAGGGGAAA	0	1652	1
TTTGGGCGTAAA	2	497	0
TATGGCGCCAAA	3	477	1
TATGGGCTTAAA	4	65	1
TACGGGGGGAAA	4	340	1
TTTGGGAGGAAT	5	293	1
AATGGGGGTAAT	5	832	0
TTAGTCGCGAAT	6	463	1
TTGGGCGGTAAA	6	655	0
CTAGGCGCCAAC	6	668	1
CAAGGGGGAAAA	8	40	1
TAAGGCGCTAAA	8	53	0
TTTGGCGGGAAA	9	12	1
TGAGGGGCAAAA	10	802	0
TTGGGGGAAAAT	10	1183	0
** ***** ***
MAP Score: 10.0253

Motif 10
GGGAGAAAATGAGG	0	1103	1
GAGAAAGAATGGGA	0	1155	1
GAGTAGTAGTAGGA	0	1170	1
TAAAAATTAGGGGG	0	1439	1
GAGTAAAAAAGGAG	2	247	0
GGGAAAAAAGGTGG	2	290	0
GCATGACAAAGGAG	2	380	0
GGGGGAGGGAGTGG	2	408	0
GAGGAAAAAGGTGA	2	728	1
GAACAAACAAGGGG	4	319	0
TAAAATACGGGGGG	4	335	1
TGGTAAACAGGGAG	4	645	1
GAGGGTTAATGGGG	5	600	1
GATAAGTCAAGGGG	5	982	1
GAATAAAATAGGGG	5	1016	1
TAATAAACAGGGGG	6	686	1
GGATAGAAGTGGGG	6	844	1
GCAGAAGGGAGGGG	6	1000	1
GCGGTAAAATGGGA	6	1084	1
GAGCGATGAGGGGT	7	212	0
GAATAATAGCAGGG	7	502	1
GGTATGGCAAGGGG	8	33	1
GATGAGTTGCAGGG	10	432	0
GAGCGGTTGAGGGG	10	807	0
GAGACGATGTGGGG	11	102	1
*** **  * ****
MAP Score: 7.53555

Motif 11
AAGAGGGGGA	0	1120	1
AATGGGAAGA	0	1162	1
GGGAGGGCGA	2	304	0
GGGGGAGGGA	2	412	0
TACGGGGGGA	4	340	1
AGGGGGGCCA	4	445	1
ATGGAGGGGA	4	464	1
AACAGGGAGT	4	650	1
AATGGGGGGT	5	607	1
AAGAGGGGAA	5	764	1
AAGGGGGGGA	5	990	1
AACAGGGGGA	6	691	1
AAGTGGGGGA	6	850	1
AGGGAGGGGT	6	1005	1
AAGGGGGAAA	8	41	1
AAGAGGGGTT	10	899	1
**********
MAP Score: 6.7197

Motif 12
TCGCACTTTTGGCG	0	347	1
GAAGGGTTTAGGCG	0	1368	1
TAGGGGGTTTGGCG	0	1446	1
TAATATTTTGGGCT	1	298	1
GTTAAGTTTTGGTG	2	16	0
GAGTGGTTTTGACA	2	946	1
TTAGGCTTTAGACG	3	17	0
TAGAGGTTTGGACA	3	161	0
GGGGCTTTTTGGCG	3	482	0
GGTAGGTTTTGGCT	4	473	0
GGGGGGTTACGACG	5	610	1
GCGTGGTTTTTGCA	6	532	0
GCCTAGTTTGGGCG	6	660	0
GTTTGGTTTTGGCG	10	153	0
GTCTTGTTCATGCG	10	735	0
TTAATGTTTAGGCG	10	840	0
*   ***** ****
MAP Score: 6.59756

Motif 13
TGCATGCAAA	0	936	0
TGCATGCAAA	3	288	1
TGCATGCAAT	0	947	1
TGGATGCAAA	5	154	0
TGCATGAAAA	6	993	0
TGCATGAAAA	5	144	1
TGCATGCATT	2	37	0
TGCATTCAAA	2	391	1
TGGTTGCAAT	6	743	1
**********
MAP Score: 5.94461

Motif 14
AGATGAGGAA	0	92	1
AAAGGGAGAA	0	1100	1
AGAGGGGGAA	0	1121	1
AGAATGGGAA	0	1160	1
AAAGTAGTAA	0	1394	0
ATGAGGGGAA	0	1653	1
AGATGGGGTA	0	1704	0
AAATGGGTAA	1	57	0
ATGGGGAGAA	1	148	0
CAGGCGGGAA	2	83	1
AAAGGAGTAT	2	377	0
CAAGGGGGAA	4	316	0
ACGGGGGGAA	4	341	1
AGAATGGGAT	5	277	1
AGAGTGGGAT	5	629	1
AAGAGGGGAA	5	764	1
AGGGGGGGAA	5	991	1
ACAGGGGGAA	6	692	1
GGAGGGGTAA	6	1007	1
AAAATGGGAA	6	1089	1
AAAGTGAGAA	7	52	0
AGAATAGGAA	8	12	0
CAAGGGGGAA	8	40	1
AAAGGAGGAA	9	77	1
AGATTGGGAA	10	208	1
AAAATGAGAA	10	370	0
AAAATAGGAA	10	454	1
AAATTGATAA	10	607	1
CAAGTGGGAA	10	674	0
AAAGTTGGAA	10	1240	1
ATGTGGGGAA	11	108	1
**********
MAP Score: 4.61677

Motif 15
AGTGAGATGGGGTA	0	1704	0
ATTTTGATGGGGAG	1	150	0
GTTTTGGTGGGCCG	2	11	0
GGGAGGGCGAGGGA	2	300	0
GGGAGGGAGTGGAT	2	406	0
GTGATGAAGCGCAG	2	816	0
ATGGAGGGGAGCCA	4	464	1
GGGTTAATGGGGGG	5	602	1
AAGTCAAGGGGGGG	5	985	1
AGTTGCATGGGCAG	6	311	0
AGTATAAAGGGCAA	6	570	0
GGATAGAAGTGGGG	6	844	1
GCGATGAGGGGTTG	7	210	0
GTTTTGGCGGGCTG	10	148	0
CGGTTGAGGGGCAA	10	804	0
GTTTAGGCGGGCAT	10	835	0
GAGACGATGTGGGG	11	102	1
AGTATCGCGGGGCG	11	145	0
***  ** **** *
MAP Score: 3.29104

Motif 16
GGGAGAAAATGAGGAATAAGAGGGGG	0	1103	1
GGGAAGAGTAGTAGTAGGAAGAAGGA	0	1165	1
GGGAAATATAACGCAATAAAAAAAAA	0	1202	1
GGGAAGTTTGAAATAGTTGATAATTA	0	1242	1
GGGAAAAGTCAATGTGTCTCGTAAAG	0	1658	1
GGGGAGAAAAGTCAATTTTAAAATAA	1	130	0
GGGGGAATTAATTTGAAGTATTTGGG	2	132	1
GGTGGAATATGATAATATTAAAATAG	2	269	0
GGCAAGAGAGATGCAACTGGGGAGGG	2	307	0
GGAGGGAGTGGATCTTAATTTGAATG	2	393	0
GGGAGGTTTTACCAATTTTTGCAAAG	2	655	0
GGGGAGTTTCAGAATTAAATAAAGAG	2	705	1
GGGGAATTTGTACTAATTTCTAACTA	4	296	0
GGGGGGCCACTTTAAAATATGGAGGG	4	446	1
AGGGGGGGAAGTTTAAATTAAAATTG	5	991	1
GGCAGGTGAGAGAAGAGATAAAATCA	5	1028	1
GGGGGAACCCTCTAAAAGAGAGAAGG	6	695	1
GGGAGGGGTAAACCATTAAAATACCA	6	1006	1
GGTAAAAATAACTGAATAATGAATTG	6	1045	1
GGCGGGAAAAGTTCTTGACAGAAAAA	9	15	1
GGAGAAAAAAAAATGAGAATAAAAAG	10	363	0
GGCAAAAGTTAAAAAGTATTGTAATA	10	783	0
GGCGGGCATTATTCTTGGGTGGAGAG	10	818	0
GGGAAAATTTAAGAGGGGTTAAAACG	10	1165	0
******    *         * *  *
MAP Score: 2.93152

Motif 17
TAAGAGGGGGAAGA	0	1119	1
TATGAGGGGAAAAG	0	1652	1
TTTGATGGGGAGAA	1	148	0
GTGGCAGGCGGGAA	2	79	1
GGCGAGGGAAAAAA	2	295	0
GGGGAGGGAGTGGA	2	407	0
TGTGAGGAGTGGTT	2	940	1
AATACGGGGGGAAA	4	338	1
GTCAAGGGGGGGAA	5	987	1
GCAGAAGGGAGGGG	6	1000	1
GATGAGGGGTTGTA	7	208	0
GGCAAGGGGGAAAA	8	38	1
TCTAAGGAAAAGGT	10	404	1
GTTGCAGGGTTGAG	10	427	0
TTTGAGGAGTTGAT	10	443	0
GTTGAGGGGCAAAA	10	802	0
TAAGAGGGGTTGGA	10	898	1
TAAGAGGGGTTAAA	10	1168	0
GACGATGTGGGGAA	11	104	1
GGGGCGCGCATGAA	11	137	0
*  ******  ***
MAP Score: 1.88481

Motif 18
AAAGTTTAGTTT	1	287	0
AAAGTTGAGTTT	10	567	0
AAAGTTAAGTTT	4	517	0
AAAGTGAAATTT	10	622	1
AAAGTGTAATTT	10	355	0
AAAGTTTAATTT	2	447	1
AAAGTTGAATTT	6	339	0
CAAGTAGAGTTT	3	391	0
AAAGTAGAGGTT	3	167	0
AAAGTCAAGTAT	4	795	1
AAAGTTAATTTT	6	937	1
AAAGTCAATTTT	1	137	0
AAACTTGAGTTT	4	349	0
AAAGTCAAATAT	0	1014	1
ACAGTTAAGTTT	5	434	1
*****  *****
MAP Score: 1.27249

Motif 19
GGAATAAGAGGGGGAA	0	1115	1
AGAGAAAGAATGGGAA	0	1154	1
ACGTGGCAGGCGGGAA	2	77	1
AAGTAGATATTGGGGG	2	121	1
GGGGAGGGCGAGGGAA	2	299	0
GTGATGGGGGAGGGAG	2	411	0
TGTAAGGTACCGGTAA	2	575	1
AAGAGGAAAAAGGTGA	2	726	1
AAGTGGAAAAAGGTAG	4	183	1
AAGTTAGTAACGGTGA	5	202	1
AAGGAAATAAAGGTAA	5	248	1
ACTAAAGTGTTGGGAA	5	552	1
ATGAGGGTATCGGTGA	5	789	1
AAGTCAAGGGGGGGAA	5	985	1
AAATAGGGGCAGGTGA	5	1021	1
GGATAGAAGTGGGGGA	6	844	1
CAGAAGGGAGGGGTAA	6	1001	1
CAAAAGGTACCGGTAA	6	1034	1
GGTATGGCAAGGGGGA	8	33	1
GAGACGATGTGGGGAA	11	102	1
* *  ** *  *****
MAP Score: 0.99016

Motif 20
GCAATAAAAAGG	2	160	0
GCAAGCAAAAGG	4	365	0
GCAATAAAACAG	4	752	1
GAAAAAAAAATG	6	117	0
GCAACCAAATCG	6	738	0
GCAATAAAAAAG	8	20	0
GAAAAAAAAATG	9	42	0
GAAAAAAAAATG	10	374	0
**** ***** *
MAP Score: 0.388378