AlignACE 4.0 05/13/04
./AlignACE -i cparvum_hsp.fa -numcols 10 -gcback 0.27 
Parameter values:
 expect =      	10
 gcback =      	0.27
 minpass =     	200
 seed =        	1181608917
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	cgd2_20 	heat shock 70 (HSP70) protein
#1	cgd2_1800 	heat shock 40 kDa protein, putative
#2	cgd2_3230 	heat shock protein DnaJ Pfj2, putative
#3	cgd3_3440 	heat shock protein HSP70, mitochondrial 
#4	cgd2_3330 	APG-1 like HSP70 domain containing protein, signal peptide plus likely ER retention motif
#5	cgd3_3770 	Hsp90
#6	cgd4_3270 	heat shock 105kD; heat shock 105kD alpha; heat shock 105kD beta; heat shock 105kDa protein 1
#7	cgd6_1090 	DnaJ(hsp40)'DnaJ(hsp40)'
#8	cgd6_2650 	heat shock protein, putative
#9	cgd6_4970 	Hsp60; GroEL-like chaperone (ATpase), predicted mitochondrial
#10	cgd7_360 	heat shock protein, Hsp70
#11	cgd7_3670 	heat shock protein 90 (Hsp90), signal peptide plus ER retention motif

Motif 1
GATAAGTCAAGGGGGGGA	5	982	1
GAATTTCCGCGAGGGGGG	4	434	1
GTTGAGCGATGAGGGGTT	7	211	0
GTGTAGTGATGGGGGAGG	2	414	0
GGATAGAAGTGGGGGATA	6	844	1
GAGGGTTAATGGGGGGTT	5	600	1
GGTATGGCAAGGGGGAAA	8	33	1
ATGCAGAAGGGAGGGGTA	6	998	1
GAAAATTTAAGAGGGGTT	10	1171	0
GTATCGGTGAGACGGGTA	5	795	1
GATAAAATAAGAGGCGTG	6	541	0
GAGCGGTTGAGGGGCAAA	10	803	0
GAACAAACAAGGGGGAAT	4	315	0
GTTTGGTTTTGGCGGGCT	10	149	0
GACGCTACATGAGGGAAG	0	1230	1
ACAGTATCGCGGGGCGCG	11	143	0
GAGACGATGTGGGGAACT	11	102	1
ATATAACTAAGAGGGGAA	5	756	1
AGGAATAAGAGGGGGAAG	0	1114	1
AGCTATTTATGAGGGGAA	0	1645	1
TTTATATATTGAGGGGAG	2	693	1
TTAAAATATGGAGGGGAG	4	457	1
ATAAATTTAAGAGGGGTT	10	891	1
GAATAAAATAGGGGCAGG	5	1016	1
ACTAAATTGTGAGGAGTG	2	933	1
GGAGAAAGTAGAGGAGTT	4	541	1
GTATCTATTTGAGGAGAA	10	383	0
TGGGGAGGGCGAGGGAAA	2	298	0
TTAATGTTTAGGCGGGCA	10	836	0
AAATTTTGATGGGGAGAA	1	148	0
AGTAGATATTGGGGGAAT	2	122	1
CTTAAAATACGGGGGGAA	4	333	1
ATAAGAAAACGAGGAGTT	0	1043	1
*    *  * ****** *
MAP Score: 37.2746

Motif 2
GGAGGGCGAGG	2	302	0
GCGAGGGGGGC	4	442	1
GCGGGGCGCGC	11	142	0
AGGGGGGGAAG	5	991	1
TGGAGGGGAGC	4	465	1
AGAGGGGGAAG	0	1121	1
GGGAGGGGTAA	6	1006	1
ACAGGGGGAAC	6	692	1
AGAGGGGTTGG	10	900	1
ACGGGGGGAAA	4	341	1
GGCAGGCGGGA	2	81	1
GCAAGGGGGAA	8	39	1
GGCGGGCTGGC	10	146	0
TGATGGGGAGA	1	149	0
GGAGGGAGTGG	2	408	0
TGGGGGGTTAC	5	609	1
AGAGGGGTTAA	10	1169	0
ACAAGGGGGAA	4	316	0
GCATGGGCAGG	6	310	0
TGAGGGGCAAA	10	803	0
AGATGGGGTAA	0	1703	0
GCAGGGCTAAC	6	50	1
TGCAGGGTTGA	10	428	0
TGGTGGGCCGA	2	10	0
AGAAGGGTCAA	6	715	1
GGGTGGAGAGC	10	817	0
******** **
MAP Score: 27.4533

Motif 3
GGGAAGAGTAG	0	1165	1
GGGAAGTTTGA	0	1242	1
GGCAGGCGGGA	2	81	1
GGCGAGGGAAA	2	298	0
GGCAAGAGAGA	2	322	0
GGGAAGATGGA	2	363	1
TGGGGGAGGGA	2	412	0
GTGAGGAGTGG	2	941	1
TGCAAGTGGAA	4	180	1
CGCGAGGGGGG	4	441	1
TGGAGGGGAGC	4	465	1
TGCAAGCGTGA	5	321	1
GTCAAGGGGGG	5	987	1
GGCAGGTGAGA	5	1028	1
GGGAGGGGTAA	6	1006	1
GGCAAGGGGGA	8	38	1
GGCGGGCTGGC	10	146	0
TGCAGGGTTGA	10	428	0
TGCAAGTGGGA	10	675	0
GGGTGGAGAGC	10	817	0
****** ****
MAP Score: 23.3664

Motif 4
CTTTTGGCGCCAA	0	352	1
AACATGGCGGTTA	0	995	1
GTTTAGGCGCCAA	0	1373	1
GGTTTGGCGGTAA	0	1451	1
TGGCAGGCGGGAA	2	80	1
GATATTGGGGGAA	2	126	1
CTGGGGAGGGCGA	2	304	0
CAAAAGGCGGGAA	2	505	1
CCTATGGCGCCAA	3	475	1
AATACGGGGGGAA	4	338	1
GCGAGGGGGGCCA	4	442	1
GTCAAGGGGGGGA	5	987	1
GATTAGTCGCGAA	6	461	1
GTTTGGGCGGTAA	6	656	0
CTGTTGGCGCCTA	6	669	0
GGCAAGGGGGAAA	8	38	1
AATAAGGCGCTAA	8	54	0
ATTTTGGCGGGAA	9	10	1
TGGCGGGCTGGCA	10	145	0
GTTGAGGGGCAAA	10	803	0
GTTTAGGCGGGCA	10	836	0
ACGATGTGGGGAA	11	105	1
CGCGGGGCGCGCA	11	141	0
* *  ********
MAP Score: 19.7483

Motif 5
ACAAAAAAAAAA	0	127	0
ATTAAAAAAAAA	0	190	1
ACAAGAAAAAAA	0	323	0
AAAAGAAGAAAA	0	461	0
ATAAAAAAAAAA	0	717	0
ATTAAAAAAAAA	0	752	0
AATAGAAGAAAA	0	872	0
AATAAAAAAAAA	0	1216	1
AAAAGAAAAAAA	1	104	1
AATAGAAAAACA	2	262	0
ATCAGAAGAACA	3	463	1
AAAAGAAAAAAA	5	65	0
AGCAAAAAAAAA	5	482	1
AGTAGAAGAACA	6	813	1
AAAAAAAGAACA	6	1141	1
ATTAAAAAAAAA	7	234	1
AATAAAAAAAAA	7	254	1
ACAAAAAAAAAA	7	380	0
ATAAGAAAAAAA	7	467	1
ATGAAAAAAAAA	9	44	0
ATCAGAAAAAAA	9	95	0
ATTAAAAGAAAA	10	301	0
AGGAGAAAAAAA	10	378	0
*  *********
MAP Score: 18.8244

Motif 6
GAACGGAATTAAAAGGTAA	2	787	1
GCAAAGAATCAAAAGGTAA	6	493	0
GGCGAGGGAAAAAAGGTGG	2	290	0
GGTAGGATTCAAAAGTTAA	6	926	1
GGAGAGATAGAAAAGTAGA	4	593	1
GCATAGACGTAAAAGTAAA	5	922	1
GTAAAGTGATAAAAGTAAA	0	1075	1
GTTGAGGGGCAAAAGTTAA	10	797	0
GATTGGCGCCAAAAGTGCG	0	348	0
GAATGGTAAATAAAGGACA	6	584	1
GTAAAGCTCTAGAAGGTCA	10	265	0
TAAAAGAAATAAAAGGCAA	0	233	0
ATAAAGAGGAAAAAGGTGA	2	723	1
GGTTAGCTGCTAAAGTCAA	0	1003	1
TGCAAGTGGAAAAAGGTAG	4	180	1
GTTAAGTTTTAAAATGGAA	5	437	1
TGATGGGGAGAAAAGTCAA	1	141	0
AATGAGAATAAAAAGTGTA	10	359	0
AAAAAGGAAATAAAGGTAA	5	245	1
GCAAGGGGGAAAAATTTAG	8	39	1
AGTGAGACTTTAAAGGCAG	4	121	0
*   **    ******  *
MAP Score: 17.565

Motif 7
GCATGCACTC	5	137	0
GCATGCAAAA	3	289	1
GCATGCAAAA	0	935	0
GCATGCAATC	0	948	1
GCTTGCATAC	5	360	1
GCATGCATTC	2	36	0
GCTTGCATAA	5	318	0
GCATGAACAA	0	984	1
GCATGAACAA	10	736	1
GCTGGCACAC	10	142	0
GCATGAAAAA	6	992	0
GCTTGTACTA	10	485	0
GCTTGTAAAA	0	591	0
GCAAGCAAAA	4	367	0
GCATGAATAA	11	134	0
GCTTGTAATA	7	150	0
GCTTGTAATA	10	117	1
**********
MAP Score: 11.2108

Motif 8
AAATGGAAAAAAGGGAGAAAATGAG	0	1091	1
AAATAAAAATTAGGGGGTTTGGCGG	0	1436	1
ATCTAGTGAGATGGGGTAACTTGTA	0	1697	0
AAATGTTGAGAAGTGGTTATTTTAA	1	114	1
GTGTGTAGTGATGGGGGAGGGAGTG	2	409	0
ATATTTATATAGGGAGGTTTTACCA	2	667	0
TTATATATTGAGGGGAGTTTCAGAA	2	694	1
ATTTTGCTATACTGGGGCTTTTTGG	3	484	0
TCCTTAAAATACGGGGGGAAACTCA	4	331	1
AATTTCCGCGAGGGGGGCCACTTTA	4	435	1
AAATATAACTAAGAGGGGAATTCAA	5	754	1
AGATAAGTCAAGGGGGGGAAGTTTA	5	981	1
ATTTGGATAGAAGTGGGGGATATTG	6	840	1
AAGTTGAGCGATGAGGGGTTGTAGA	7	206	0
AATTAAAGAAAAGGAGGAACTTTGG	9	68	1
TAATAAATTTAAGAGGGGTTGGATA	10	889	1
TAATTTTTCTTTGGGGGAAAATTTA	10	1180	0
TCTTGAGACGATGTGGGGAACTAAG	11	98	1
*  *     ** *****       *
MAP Score: 7.76862

Motif 9
GCCAAAAGTGCGAGAA	0	344	0
GCAAAAACTGTAATTA	0	409	0
GCAATCAATGTGGACA	0	952	1
GCCAAATCGAGAGTTA	0	1381	1
GCAAAATTTGATACTA	1	342	1
GCCCAAAAGGCGGGAA	2	502	1
GCAAAAATTGGTAAAA	2	659	1
GCCATAAAGGATACGA	4	413	0
GCCCCCCTCGCGGAAA	4	437	0
GCCAAAATTAAGGTTA	4	501	1
GCCAAATAAATGGTGA	5	955	1
GCCAAAAGTGAGAATA	7	50	0
GCCATACCGGCAATAA	8	25	0
GCCAAAATAAATGTCA	9	2	0
GCCAAATCAAGAAGGA	10	337	0
GCAAACTCCGTGAGAA	10	592	1
GCCCACATAATTAATA	10	925	1
******   * **  *
MAP Score: 5.52671

Motif 10
GGCGCCAAAA	0	353	0
GGCGCCTAAA	0	1374	0
ACCGCCAAAC	0	1452	0
GGCGGGAACA	2	85	1
CGAGGGAAAA	2	297	0
GGCGGGAACA	2	510	1
GACGAGCAAA	3	11	0
GGCGCCAAAA	3	480	1
GGAGCCAAAA	4	471	1
ACCGCCCAAA	6	658	1
GGCGCCAACA	6	671	1
CAAGCCAAAA	7	59	0
GCAGGGAAGA	7	510	1
AGGGGGAAAA	8	42	1
CCCGCCAAAA	9	11	0
CCCGCCAAAA	10	151	1
AGGGGCAAAA	10	802	0
CCCGCCTAAA	10	838	1
CCCGCGATAC	11	148	1
**********
MAP Score: 5.17219

Motif 11
AGAAAACGAGGAG	0	1046	1
GGAAAAAAGGGAG	0	1095	1
GGAATAAGAGGGG	0	1115	1
GAGAAAGAATGGG	0	1155	1
GAAAATTGAAGGG	0	1361	1
AAAAATTAGGGGG	0	1440	1
AGTAATAAATGGG	1	60	0
AGTAAAAAAGGAG	2	247	0
GGGAAAAAAGGTG	2	291	0
GGGGAGGGAGTGG	2	408	0
ATATATTGAGGGG	2	696	1
GAGGAAAAAGGTG	2	728	1
AAATTGTGAGGAG	2	936	1
GCGAATTGAGGAG	4	154	0
ACAAACAAGGGGG	4	318	0
AAAATACGGGGGG	4	336	1
AAATATGGAGGGG	4	460	1
GAAAGTAGAGGAG	4	544	1
GAGAATAAGGGAA	4	565	0
GGTAAACAGGGAG	4	646	1
AGAAATTTGGGAG	5	288	1
GGTTAATGGGGGG	5	603	1
GGGTATCGGTGAG	5	793	1
AATAAATGGTGAG	5	959	1
ATAAGTCAAGGGG	5	983	1
AATAAAATAGGGG	5	1017	1
ATTGAAAAAGGAG	6	419	0
AATAAACAGGGGG	6	687	1
GGATAGAAGTGGG	6	844	1
AAAAAATAAGGCG	8	58	0
AGGAGTTGATGAG	10	440	0
ATGAATTGGTGAG	10	546	0
AATTTAAGAGGGG	10	894	1
AATTTAAGAGGGG	10	1173	0
GGGAACTAAGGAG	11	113	1
** **  ******
MAP Score: 4.58378

Motif 12
TTTGATGGGGAG	1	150	0
TTTGGTGGGCCG	2	11	0
TGGGGAGGGCGA	2	304	0
TGGGGGAGGGAG	2	411	0
TTGCATGGGCAG	6	311	0
TAGTTTGGGCGG	6	659	0
TTTGGCGGGCTG	10	148	0
TTGGGTGGAGAG	10	818	0
TATCGCGGGGCG	11	145	0
***** **** *
MAP Score: 2.18951

Motif 13
ATAAGAAAACGAGGAG	0	1043	1
GGGAGAAAATGAGGAA	0	1103	1
GAGAAAGAATGGGAAG	0	1155	1
GGGAGGGCGAGGGAAA	2	298	0
ATGGGGGAGGGAGTGG	2	408	0
GAGGGTTAATGGGGGG	5	600	1
ATAACTAAGAGGGGAA	5	758	1
GTATCGGTGAGACGGG	5	795	1
AAGTCAAGGGGGGGAA	5	985	1
GGGCAGGTGAGAGAAG	5	1027	1
GGATAGAAGTGGGGGA	6	844	1
ATGCAGAAGGGAGGGG	6	998	1
TGAGCGATGAGGGGTT	7	211	0
GTATGGCAAGGGGGAA	8	34	1
TTAAAGAAAAGGAGGA	9	70	1
GAGCGGTTGAGGGGCA	10	805	0
TTAAAGAAGAGAGGTA	10	958	1
GAGACGATGTGGGGAA	11	102	1
* * **  * **** *
MAP Score: 2.03166

Motif 14
TAAGAGGGGGA	0	1119	1
AATTAGGGGGT	0	1443	1
TATGAGGGGAA	0	1652	1
GCAGGCGGGAA	2	82	1
TATTGGGGGAA	2	128	1
AAAGGCGGGAA	2	507	1
TATTGAGGGGA	2	699	1
TACGGGGGGAA	4	340	1
TATGGAGGGGA	4	463	1
TAATGGGGGGT	5	606	1
TAAGAGGGGAA	5	763	1
TCAAGGGGGGG	5	988	1
AAACAGGGGGA	6	690	1
GAAGTGGGGGA	6	849	1
AAGCGAGCGAA	7	156	1
GAGTTAGGGAA	7	494	1
GCAAGGGGGAA	8	39	1
AAAAGGAGGAA	9	76	1
GAAGAGAGGTA	10	963	1
GATGTGGGGAA	11	107	1
** ********
MAP Score: 1.73788

Motif 15
AAAAGGGAGAAAATGAG	0	1099	1
GAATGGGAAGAGTAGTA	0	1161	1
AATTAGGGGGTTTGGCG	0	1443	1
ATGAGGGGAAAAGTCAA	0	1653	1
AGATGGGGTAACTTGTA	0	1697	0
ATTTGGGAGCCTTTTTA	2	151	1
AAAAGGAGATAGAAGGA	2	238	0
ACTGGGGAGGGCGAGGG	2	301	0
ATGGGGGAGGGAGTGGA	2	407	0
AAAGGCGGGAACATGCA	2	507	1
ATATGGAAAGAGGTCAA	3	198	1
ACAAGGGGGAATTTGTA	4	310	0
ATACGGGGGGAAACTCA	4	339	1
CGAGGGGGGCCACTTTA	4	443	1
ATATGGAGGGGAGCCAA	4	462	1
ATTTGGGAGGAATACAA	5	292	1
AGACGGGTACGCAAGTA	5	804	1
AAATGGGGGTAATTGTT	5	828	0
AAGGGGGGGAAGTTTAA	5	990	1
AAATAGGGGCAGGTGAG	5	1021	1
ACAGGGGGAACCCTCTA	6	692	1
AAGTGGGGGATATTGTA	6	850	1
AAGGGAGGGGTAAACCA	6	1004	1
ATGTGGGGAACTAAGGA	11	108	1
* * ******    * *
MAP Score: 1.4282

Motif 16
ACGAGGAGTTG	0	1051	1
AAGAGGGGGAA	0	1120	1
AAGAGTAGTAG	0	1168	1
ATTAGGGGGTT	0	1444	1
AGGAGTGGTTT	2	944	1
AGTAGGGTTTA	3	95	0
AGTAGAGGTTT	3	166	0
AATGGGGGGTT	5	607	1
AATGGGGGTAA	5	833	0
AAGGGGGGGAA	5	990	1
AGGCGTGGTTT	6	537	0
GGGAGGGGTAA	6	1006	1
ATGAGGGGTTG	7	210	0
ATTAGTGGTAA	10	877	1
AAGAGGGGTTG	10	899	1
AATAGCGGTTA	10	998	1
AAGAGGGGTTA	10	1170	0
* *********
MAP Score: 0.541493

Motif 17
GGGGTAACTTGTA	0	1697	0
GAGGGGAGTTTCA	2	703	1
GGGGGAATTTGTA	4	310	0
GGGGGTAATTGTT	5	828	0
GGGGGGAAGTTTA	5	993	1
GGGGGAAAATTTA	10	1180	0
***** *  ****
MAP Score: 0.447717

Motif 18
AAGAGGGGGAA	0	1120	1
GGGCGAGGGAA	2	299	0
GAGAGATGCAA	2	317	0
GGAAGATGGAA	2	364	1
GAGGGAGTGGA	2	407	0
GAAAGAGGTCA	3	203	1
GAGGGGGGCCA	4	444	1
GAGGGGAGCCA	4	467	1
GAATAAGGGAA	4	565	0
GAGTGGGATAG	5	630	1
AAGGGGGGGAA	5	990	1
GGGCAGGTGAG	5	1027	1
GAGAAGGGTCA	6	714	1
GGGAGGGGTAA	6	1006	1
GAGTGAGTCAA	6	1116	1
GAGGGGTTGTA	7	208	0
GCAAGGGGGAA	8	39	1
GAGAGAGTCAA	10	230	1
GAAAGATTGAA	10	749	0
GAGCGGTTGAG	10	810	0
GAGGGGTTGGA	10	901	1
*** *******
MAP Score: 0.332206