AlignACE 4.0 05/13/04
./AlignACE -i cparvum_hsp.fa -numcols 10 -gcback 0.27 
Parameter values:
 expect =      	10
 gcback =      	0.27
 minpass =     	200
 seed =        	1181608875
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	cgd2_20 	heat shock 70 (HSP70) protein
#1	cgd2_1800 	heat shock 40 kDa protein, putative
#2	cgd2_3230 	heat shock protein DnaJ Pfj2, putative
#3	cgd3_3440 	heat shock protein HSP70, mitochondrial 
#4	cgd2_3330 	APG-1 like HSP70 domain containing protein, signal peptide plus likely ER retention motif
#5	cgd3_3770 	Hsp90
#6	cgd4_3270 	heat shock 105kD; heat shock 105kD alpha; heat shock 105kD beta; heat shock 105kDa protein 1
#7	cgd6_1090 	DnaJ(hsp40)'DnaJ(hsp40)'
#8	cgd6_2650 	heat shock protein, putative
#9	cgd6_4970 	Hsp60; GroEL-like chaperone (ATpase), predicted mitochondrial
#10	cgd7_360 	heat shock protein, Hsp70
#11	cgd7_3670 	heat shock protein 90 (Hsp90), signal peptide plus ER retention motif

Motif 1
GATAAGTCAAGGGGGG	5	982	1
GGATAGAAGTGGGGGA	6	844	1
GTTGAGCGATGAGGGG	7	213	0
GAGGGTTAATGGGGGG	5	600	1
GGTATGGCAAGGGGGA	8	33	1
GAATTTCCGCGAGGGG	4	434	1
GTGTAGTGATGGGGGA	2	416	0
ATGCAGAAGGGAGGGG	6	998	1
GTATCGGTGAGACGGG	5	795	1
GTTTGGTTTTGGCGGG	10	151	0
GAAAATTTAAGAGGGG	10	1173	0
GAGACGATGTGGGGAA	11	102	1
GAACAGTATCGCGGGG	11	147	0
GAACAAACAAGGGGGA	4	317	0
GAGCGGTTGAGGGGCA	10	805	0
CTTAAAATACGGGGGG	4	333	1
AGCTATTTATGAGGGG	0	1645	1
AGGAATAAGAGGGGGA	0	1114	1
AAAATATGGAGGGGAG	4	459	1
ATATAACTAAGAGGGG	5	756	1
GACGCTACATGAGGGA	0	1230	1
ATAAATTTAAGAGGGG	10	891	1
GTTAAGTTTTGGTGGG	2	14	0
GGAGAAAGTAGAGGAG	4	541	1
GATAAAATAAGAGGCG	6	543	0
AAATTTTGATGGGGAG	1	150	0
AGTAGATATTGGGGGA	2	122	1
GTATCTATTTGAGGAG	10	385	0
AACTGGGGAGGGCGAG	2	303	0
ATCGCGAATTGAGGAG	4	154	0
CATTTATTTTGGCGGG	9	5	1
GAATAAAATAGGGGCA	5	1016	1
**   *  * ******
MAP Score: 38.167

Motif 2
GCGAGGGGGGCC	4	442	1
TGGAGGGGAGCC	4	465	1
GGGAGGGGTAAA	6	1006	1
GCATGGGCAGGA	6	309	0
TCAAGGGGGGGA	5	988	1
TGGCGGGCTGGC	10	146	0
TGATGGGGAGAA	1	148	0
GCAAGGGGGAAA	8	39	1
AGAGGGGGAAGA	0	1121	1
GCGGGGCGCGCA	11	141	0
ACGGGGGGAAAC	4	341	1
AGATGGGGTAAC	0	1702	0
TGGTGGGCCGAA	2	9	0
GGAGGGCGAGGG	2	301	0
ACAGGGGGAACC	6	692	1
TGATGGGGGAGG	2	414	0
GGCAGGCGGGAA	2	81	1
TGAGGGGCAAAA	10	802	0
AGAAGTGGGGGA	6	848	1
AGCAGGGCTAAC	6	49	1
GCAAGTGGAAAA	4	181	1
GCAAGTGGGAAA	10	673	0
TCATGTGGAAAA	4	95	0
*** **** ***
MAP Score: 23.9411

Motif 3
CTTTTGGCGCC	0	352	1
GTTTAGGCGCC	0	1373	1
GGTTTGGCGGT	0	1451	1
GTTTTGGTGGG	2	14	0
ATTTGGGAGCC	2	151	1
TTTTTGGCGCC	3	480	0
GTTTTGGCTCC	4	471	0
GTTTAGGAGAG	4	588	1
GTTTGGGCGGT	6	658	0
CTGTTGGCGCC	6	671	0
ATTTTGGCGGG	9	10	1
GTTTTGGCGGG	10	151	0
GTTTAGGCGGG	10	838	0
**** ******
MAP Score: 20.529

Motif 4
AAAAGAAAGAAAGA	0	267	1
AAATGAAAGAAAGA	0	1132	1
ATAAGAAAAAAATA	7	467	1
ATCAGAAAAAAACA	9	93	0
AGGAGAAAAAAAAA	10	376	0
ATAGGAAAAAAATA	0	568	0
ATTCGAAAAAAAAA	6	119	0
ACTCGAAAAAAAAA	7	112	0
AATAGAAGAAAATA	0	870	0
AACTGAAGAAAATA	10	70	0
AATTAAAAGAAATA	0	241	0
AATTAAAAGAAAAA	10	300	0
ACAAAAAAGAAAAA	1	100	1
AAAAAAAAGAAAAA	5	67	0
ATAAAAAAAAAAAA	7	255	1
ACAAAAAAAAAAGA	7	378	0
AACAAAAAAAAAAA	0	126	0
ATGGAAAAAAAATA	0	1341	0
AAAAAAAAAAAAAA	7	237	1
ATAAAAAAAAAATA	0	715	0
AAATAAAGGAAAGA	10	754	0
AGAAAAAGGAAAAA	2	192	0
AAAAAAAGGAAATA	5	243	1
AATTAAAGAAAATA	4	213	0
ATTAAAAAAAAAGG	0	750	0
AATAAAAAAAAATG	0	1216	1
ATGAAAAAAAAATG	9	42	0
ATTGAAAGGAAATG	5	671	0
AATTAAAGAAAAGG	9	68	1
*   ******** *
MAP Score: 18.1631

Motif 5
AATAAATGGGTAAGGT	1	54	0
AAAAAAAGGGTAATTT	5	1061	1
AAACAAGGGGGAATTT	4	313	0
AAATAAAAGGCAATTT	0	230	0
AAAGAATAGGAAAAAT	8	8	0
AAGAAAAAGGAAAAAT	2	191	0
AATCAAAAGGTAATGT	6	490	0
AATAAACAGGAAAAGT	2	889	1
AACTAAGAGGGGAATT	5	760	1
AAAGAATGGGAAGAGT	0	1158	1
AATAAAGAGGAAAAAG	2	722	1
AATTAAAAGGTAATAG	2	793	1
AAAAAAGGGAGAAAAT	0	1097	1
AAGAAAAGGAGGAACT	9	73	1
AATAAATGGAAGAATT	6	288	1
AAACAAAGGAAGACAT	5	46	1
AATAAAATGGTAAAAT	0	803	0
AAATAAATGGTGAGAT	5	958	1
AATTAAAAGAAAAAAT	10	298	0
AAATAAAGGAAAGATT	10	752	0
**  ** *** **  *
MAP Score: 15.8783

Motif 6
CTTTTGGCGCCAA	0	352	1
TAAGAGGGGGAAG	0	1119	1
GTTTAGGCGCCAA	0	1373	1
GGTTTGGCGGTAA	0	1451	1
TGGCAGGCGGGAA	2	80	1
GTGATGGGGGAGG	2	414	0
CAAAAGGCGGGAA	2	505	1
CCTATGGCGCCAA	3	475	1
AAACAAGGGGGAA	4	316	0
AATACGGGGGGAA	4	338	1
GCGAGGGGGGCCA	4	442	1
GGAGGGGAGCCAA	4	466	1
TAATGGGGGGTTA	5	606	1
TAAATGGGGGTAA	5	833	0
GTCAAGGGGGGGA	5	987	1
GACAAAGCGTCAA	6	599	1
GTTTGGGCGGTAA	6	656	0
CTGTTGGCGCCTA	6	669	0
GAAGTGGGGGATA	6	849	1
GGCAAGGGGGAAA	8	38	1
AATAAGGCGCTAA	8	54	0
ATTTTGGCGGGAA	9	10	1
GTTTTGGCGGGCT	10	149	0
GATTTGGCGTAAA	10	345	1
GTTGAGGGGCAAA	10	803	0
GTTTAGGCGGGCA	10	836	0
CTAATAGCGGTTA	10	996	1
TAAGAGGGGTTAA	10	1169	0
TCTTTGGGGGAAA	10	1185	0
CGCGGGGCGCGCA	11	141	0
*   *********
MAP Score: 14.2346

Motif 7
ATAAGAAAACGAGGAGTTG	0	1043	1
GAGGAATAAGAGGGGGAAG	0	1113	1
GAAAGAATGGGAAGAGTAG	0	1157	1
GAAAAAAAATGTTGAGAAG	1	108	1
TAAAAATTTTGATGGGGAG	1	150	0
GTTAAGTTTTGGTGGGCCG	2	11	0
GAGAGATGCAACTGGGGAG	2	309	0
GTGATGGGGGAGGGAGTGG	2	408	0
TTAAAATATGGAGGGGAGC	4	457	1
GGAGAAAGTAGAGGAGTTT	4	541	1
TAAAAATAATCTGGAGAAG	5	571	1
GTGAGGGTTAATGGGGGGT	5	598	1
GAAAATGAATATTGAGAAG	5	643	1
TGAGGGTATCGGTGAGACG	5	790	1
TAGATAAGTCAAGGGGGGG	5	980	1
TTGAATAAAATAGGGGCAG	5	1014	1
TTGGATAGAAGTGGGGGAT	6	842	1
GTTGAGCGATGAGGGGTTG	7	210	0
GTGAATTAATGATGTGATT	7	292	1
GAAAAAAATAAGTGAGTGG	7	471	1
GGGAATAATAGCAGGGAAG	7	500	1
GCAGGGTTGAGCTGAGATG	10	419	0
GTGGAGAGCGGTTGAGGGG	10	807	0
ATAAATTTAAGAGGGGTTG	10	891	1
GGGGAAAATTTAAGAGGGG	10	1173	0
TTGAGACGATGTGGGGAAC	11	100	1
* ***     * ****  *
MAP Score: 11.2431

Motif 8
GCATGCACTC	5	137	0
GCATGCAAAA	0	935	0
GCATGCAAAA	3	289	1
GCATGCATTC	2	36	0
GCTTGCATAC	5	360	1
GCATGCAATC	0	948	1
GCATGAACAA	0	984	1
GCATGAACAA	10	736	1
GCTGGCACAC	10	142	0
GCTTGCATAA	5	318	0
GCATGAAAAA	6	992	0
GCATGAATAA	11	134	0
GCAAGCAAAA	4	367	0
**********
MAP Score: 10.8955

Motif 9
ATAAGAAAACGAGGAG	0	1043	1
GAGGAATAAGAGGGGG	0	1113	1
GAAGGAAACAATGTAG	0	1185	1
AAATTTTGATGGGGAG	1	150	0
AAGAGTAAAAAAGGAG	2	247	0
GAGGGAAAAAAGGTGG	2	290	0
AGATGCAACTGGGGAG	2	309	0
ATGCATGACAAAGGAG	2	380	0
GGGGGAGGGAGTGGAT	2	406	0
AAGTGATGAAGCGCAG	2	816	0
AAATTGTGAGGAGTGG	2	936	1
AAGTGGAAAAAGGTAG	4	183	1
AGGAACAAACAAGGGG	4	319	0
AAAATATGGAGGGGAG	4	459	1
GGAGAAAGTAGAGGAG	4	541	1
GAGGGTTAATGGGGGG	5	600	1
ATAAGTCAAGGGGGGG	5	983	1
TTGGATAGAAGTGGGG	6	842	1
ATGCAGAAGGGAGGGG	6	998	1
GAGCGATGAGGGGTTG	7	210	0
AAAAATAAGTGAGTGG	7	474	1
GGGAATAATAGCAGGG	7	500	1
GAGAGCGGTTGAGGGG	10	807	0
GAAAATTTAAGAGGGG	10	1173	0
TTGAGACGATGTGGGG	11	100	1
GAACAGTATCGCGGGG	11	147	0
*** *  *  * ****
MAP Score: 9.17524

Motif 10
GTGCGAGAATTTC	0	340	0
AAGGGAGAAAATG	0	1101	1
GAGGGGGAAGAAA	0	1122	1
ATGAGGGAAGTTT	0	1238	1
GAGGGGAAAAGTC	0	1655	1
ATGGGGAGAAAAG	1	145	0
AGGCGGGAACATA	2	84	1
TTGGGGGAATTAA	2	130	1
AAGGTGGAATATG	2	284	0
AGGCGGGAACATG	2	509	1
AAGGGGGAATTTG	4	312	0
ACGGGGGGAAACT	4	341	1
ATGGGGGGTTACG	5	608	1
AAGAGGGGAATTC	5	764	1
ATGGGGGTAATTG	5	830	0
AGGGGGGGAAGTT	5	991	1
GTGGGGGATATTG	6	852	1
GTGCGGTAAAATG	6	1082	1
ATGAGGGGTTGTA	7	208	0
AAGGGGGAAAAAT	8	41	1
GCGGGAAAAGTTC	9	16	1
AAGGAGGAACTTT	9	78	1
AAGTGGGAAATTG	10	670	0
GGGGGAAAATTTA	10	1180	0
* *******  **
MAP Score: 8.54956

Motif 11
TGATGGGGAG	1	150	0
GGCAGGCGGG	2	81	1
GGAGGGCGAG	2	303	0
GGCAAGAGAG	2	323	0
GGGAAGATGG	2	363	1
GAGGGAGTGG	2	408	0
TTGAGGGGAG	2	701	1
GGAAAAGTGG	2	897	1
TGAGGAGTGG	2	942	1
GGAAAGGTGG	4	7	0
CGCGAGGGGG	4	441	1
ATATGGAGGG	4	462	1
TAATGGGGGG	5	606	1
GTGAGACGGG	5	801	1
GTCAAGGGGG	5	987	1
GGCAGGTGAG	5	1028	1
GAGAGAAGGG	6	712	1
TGCAGAAGGG	6	999	1
CGATGAGGGG	7	213	0
GGCAAGGGGG	8	38	1
GGCGGGCTGG	10	147	0
TGCAAGTGGG	10	676	0
GGTTGAGGGG	10	807	0
GGGTGGAGAG	10	818	0
TTTAGGCGGG	10	838	0
TTAAGAGGGG	10	897	1
TTAAGAGGGG	10	1173	0
**********
MAP Score: 7.48357

Motif 12
AAGAGGGGGAAGAAAT	0	1120	1
AAGAGAAAGAATGGGA	0	1153	1
ATGAGGGGAAAAGTCA	0	1653	1
ATGGGGAGAAAAGTCA	1	142	0
GAGGGAGTGGATCTTA	2	402	0
AAGAGGAAAAAGGTGA	2	726	1
ACGGGGGGAAACTCAA	4	341	1
GAGGGGGGCCACTTTA	4	444	1
GAGGGGAGCCAAAACC	4	467	1
GAGAGATAGAAAAGTA	4	594	1
GAGAGCCTGTACAGAA	4	717	1
GAGTGCATGCATGAAA	5	137	1
GTGGGATAGCAGAAAA	5	632	1
GAGGGGAATTCAAGTA	5	766	1
AAGGGGGGGAAGTTTA	5	990	1
GAGAGAAGAGATAAAA	5	1035	1
AAGGGCAAGAAGCCAA	6	562	0
GAGGGGTAAACCATTA	6	1008	1
GAGGGGTTGTAGAAAA	7	203	0
GCAGGGAAGAAAGTTA	7	510	1
GAGAGAGTCAAAAAAA	10	230	1
GAGGGGCAAAAGTTAA	10	797	0
GAGGGGTTGGATAACA	10	901	1
GAGAGGTACCATATTA	10	966	1
GAGGGGTTAAAACGCT	10	1163	0
GCGGGGCGCGCATGAA	11	137	0
****** ** *    *
MAP Score: 5.04273

Motif 13
AAGAATGGGAAG	0	1159	1
AAAATTGAAGGG	0	1362	1
ATTTATGAGGGG	0	1649	1
AATGTTGAGAAG	1	115	1
AATTTTGATGGG	1	153	0
AGTTTTGGTGGG	2	14	0
TATATTGAGGGG	2	697	1
AATTGTGAGGAG	2	937	1
TATATTGATAGG	3	112	0
CGAATTGAGGAG	4	154	0
AATATGGAGGGG	4	461	1
AAAGTAGAGGAG	4	545	1
AAATTTGGGAGG	5	290	1
AATCTGGAGAAG	5	578	1
AATATTGTGAGG	5	592	1
AATATTGAGAAG	5	650	1
AACTAAGAGGGG	5	760	1
ATCGGTGAGACG	5	797	1
AAGGGGGGGAAG	5	990	1
AGGTGAGAGAAG	5	1031	1
AAAAGAGAGAAG	6	708	1
AATTTTGATGAG	6	943	1
AGAAGGGAGGGG	6	1002	1
AGCGATGAGGGG	7	213	0
TATTTTGAGGAG	10	448	0
AAAATTGATAAG	10	606	1
AAAGAAGAGAGG	10	960	1
AAAGTTGGAAAG	10	1240	1
**  ********
MAP Score: 2.78422

Motif 14
GAGGGAAGTT	0	1240	1
TGGGGGAATT	2	131	1
GAGGGGAGTT	2	703	1
GGGGGAAACT	4	344	1
GAGGGGGGCC	4	444	1
GAGGGGAGCC	4	467	1
ACAGGGAGTT	4	651	1
ATGGGGGGTT	5	608	1
GAGGGGAATT	5	766	1
GGGGGGAAGT	5	993	1
GTGGGGAACT	11	110	1
**********
MAP Score: 2.59839

Motif 15
AGAATGAGAATT	0	511	0
ATAATGAGAATT	2	50	0
AAATTTAGAATT	3	612	1
AAACTGAGAATA	4	571	0
ATACTGAGAATA	6	225	1
AAAGTGAGAATA	7	50	0
AAAGTTAGAATA	7	519	1
AAAATGAGAATA	10	368	0
ATAATTAGAATA	10	1109	0
* * ********
MAP Score: 1.70327

Motif 16
AAAGAAAGAAA	0	268	1
ACAAGAAAAAA	0	324	0
AAAAGAAGAAA	0	462	0
AAAAGGGAGAA	0	1099	1
AAGAGGGGGAA	0	1120	1
GAAAGAAAGAA	0	1136	1
AAGAATGGGAA	0	1159	1
GGAAGAAGGAA	0	1181	1
ACATGAGGGAA	0	1236	1
AAAGAAAAAAA	1	105	1
GCAGGCGGGAA	2	82	1
AAAAGGAAAAA	2	192	0
GAAGATGGAAA	2	365	1
AAAGGCGGGAA	2	507	1
AAAAGTAGAAA	3	259	1
GCAAGTGGAAA	4	181	1
ACAAGGGGGAA	4	316	0
ACGGGGGGAAA	4	341	1
GAATAAGGGAA	4	565	0
AAAAAAAGAAA	5	69	0
AAAAAAAGGAA	5	243	1
AAGGGGGGGAA	5	990	1
GCAGGTGAGAG	5	1029	1
AAGGGCAAGAA	6	567	0
AAAAGAGAGAA	6	708	1
GAAAGTAAAAA	6	1135	1
AAAAGTGAGAA	7	52	0
AAAAAAAGAAA	7	376	0
ATAAGAAAAAA	7	467	1
GCAGGGAAGAA	7	510	1
GCAAGGGGGAA	8	39	1
AAAAGGAGGAA	9	76	1
AAAAGAAAAAA	10	299	0
AAAAATGAGAA	10	370	0
GCAAGTGGGAA	10	674	0
***** *****
MAP Score: 1.44803

Motif 17
GAAAATAAATTACGTG	0	861	0
AATGGAAAAAAGGGAG	0	1092	1
GAGGAATAAGAGGGGG	0	1113	1
GAGAAAGAATGGGAAG	0	1155	1
AGGAAACAATGTAGTG	0	1187	1
AGGGGAAAAGTCAATG	0	1656	1
GGGAATTAATTTGAAG	2	134	1
AAGAGTAAAAAAGGAG	2	247	0
GGGAAAAAAGGTGGAA	2	288	0
AAAGAGGAAAAAGGTG	2	725	1
GAAGACTATTTCGGAG	2	749	1
AAAGAACAAGTCAGTG	3	640	0
AGGAACAAACAAGGGG	4	319	0
AAGACATATTTTGGAG	4	529	1
AAGAAAAAAATTAATG	5	59	0
GAGGGTTAATGGGGGG	5	600	1
GGGGGTAATTGTTGAG	5	825	0
AAGAAAAAAATAAGTG	7	469	1
AGGGAATAATAGCAGG	7	499	1
GGGGAAAAATTTAGCG	8	44	1
GAGAGTCAAAAAAAGG	10	232	1
GAGAAAAAAAAATGAG	10	372	0
GGGGAAAATTTAAGAG	10	1176	0
GGGAACTAAGGAGACG	11	113	1
*****  **   ** *
MAP Score: 0.238573