VCU Bioinformatics and Bioengineering Summer Institute
Introduction to orthologs and Markov models - Questionnaire

Part I: Basic information

Your name 

Part II: Orthologs
1. Did you understand the problem illustrated in the Scenario? 

2. Do you see the distinction between orthologs and paralogs? 

3. Could you set forth in principle a practical method to determine whether two genes in different organisms are orthologous to one another? 

4. Comments/requests on this section? 

Part IV: Markov Models

5. Were you successful in downloading and running Hamlet.pl and Display_hash.pl? 

6. Can you with some success crudely predict the relative values found in a model produced by Hamlet.pl? 

7. Do you understand what effect changing the order of the model has on the results? 

8. Comments/requests on this section? 
 

Part III: Miscellaneous

9. (If you live in Gladding) Does your ID card work to get you in the building? 

10. What are your thoughts about Perl? 

11. Comments, concerns, questions? 

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