BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 2:1.72-308 direct Length: 79 Class: 1 (78 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.324 0.136 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 277544 Number of Sequences: 6135 Number of extensions: 8601 Number of successful extensions: 34 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 0 length of query: 78 length of database: 1,969,620 effective HSP length: 43 effective length of query: 35 effective length of database: 1,705,815 effective search space: 59703525 effective search space used: 59703525 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 3:1.305-622 direct Length: 106 Class: 1 (105 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.311 0.129 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 401380 Number of Sequences: 6135 Number of extensions: 14562 Number of successful extensions: 32 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 105 length of database: 1,969,620 effective HSP length: 45 effective length of query: 60 effective length of database: 1,693,545 effective search space: 101612700 effective search space used: 101612700 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 83 (36.6 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 4:2.100-213 reverse Length: 38 Class: 2 (37 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.325 0.155 0.488 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98779 Number of Sequences: 6135 Number of extensions: 1292 Number of successful extensions: 2 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 37 length of database: 1,969,620 effective HSP length: 13 effective length of query: 24 effective length of database: 1,889,865 effective search space: 45356760 effective search space used: 45356760 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 5:2.261-392 direct Length: 44 Class: 2 (43 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.319 0.131 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 146586 Number of Sequences: 6135 Number of extensions: 3046 Number of successful extensions: 6 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 43 length of database: 1,969,620 effective HSP length: 19 effective length of query: 24 effective length of database: 1,853,055 effective search space: 44473320 effective search space used: 44473320 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 6:2.517-645 direct Length: 43 Class: 2 (42 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.323 0.133 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 168144 Number of Sequences: 6135 Number of extensions: 3635 Number of successful extensions: 5 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 0 length of query: 42 length of database: 1,969,620 effective HSP length: 18 effective length of query: 24 effective length of database: 1,859,190 effective search space: 44620560 effective search space used: 44620560 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 7:2.657-848 reverse Length: 64 Class: 2 (63 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.324 0.141 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 246682 Number of Sequences: 6135 Number of extensions: 7266 Number of successful extensions: 13 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 0 length of query: 63 length of database: 1,969,620 effective HSP length: 33 effective length of query: 30 effective length of database: 1,767,165 effective search space: 53014950 effective search space used: 53014950 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 8:3.1-221 reverse Length: 75 Class: 2 (74 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.313 0.128 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 240163 Number of Sequences: 6135 Number of extensions: 7456 Number of successful extensions: 16 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 74 length of database: 1,969,620 effective HSP length: 40 effective length of query: 34 effective length of database: 1,724,220 effective search space: 58623480 effective search space used: 58623480 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 9:3.659-862 reverse Length: 68 Class: 2 (67 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.318 0.131 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 187919 Number of Sequences: 6135 Number of extensions: 4242 Number of successful extensions: 7 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 67 length of database: 1,969,620 effective HSP length: 43 effective length of query: 24 effective length of database: 1,705,815 effective search space: 40939560 effective search space used: 40939560 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 10:4.1-210 reverse Length: 74 Class: 2 (73 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.314 0.133 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 296090 Number of Sequences: 6135 Number of extensions: 9710 Number of successful extensions: 18 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 73 length of database: 1,969,620 effective HSP length: 37 effective length of query: 36 effective length of database: 1,742,625 effective search space: 62734500 effective search space used: 62734500 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 82 (36.2 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 11:4.225-377 direct Length: 51 Class: 2 (50 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.322 0.130 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 174067 Number of Sequences: 6135 Number of extensions: 3755 Number of successful extensions: 7 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 50 length of database: 1,969,620 effective HSP length: 26 effective length of query: 24 effective length of database: 1,810,110 effective search space: 43442640 effective search space used: 43442640 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 12:5.201-875 direct Length: 228 Class: 1 (227 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value all7128 (3084 aa) <-124556 similar to HlyA, RTX family 60 2e-010 alr0276 (2349 aa) 298527-> hypothetical protein 50 2e-007 all2655 (3263 aa) <-3222397 unknown protein 44 2e-005 alr7304 (4937 aa) 316783-> similar to hlyA 39 8e-004 >all7128 (3084 aa) <-124556 similar to HlyA, RTX family Length = 3083 Score = 60.1 bits (144), Expect = 2e-010 Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 13/155 (8%) Query: 10 TYSYDVEDGNGGSVAQTATITITGSNDTPXXXXXXXXXXXEDDAAYSLNLLSNA-SDADI 68 ++SY V DG GG+ +QT T+ IT ND P +D A++ + +N +D D Sbjct: 2243 SFSYTVSDGKGGTASQTITLEITAVNDAPTLANAIANQTATEDTAFTFTIPANTFTDVDA 2302 Query: 69 SDTLNVNNLTLLSGDASGITVSGNALSIDPNAYNTLAAGESE---VITYSYDVEDGNGGS 125 D L + TL G N LS +P+ + + + D G S Sbjct: 2303 GDALTY-SATLADG-----ANLPNWLSFNPSTRTFIGTPTNNSVGTVNIRVTATDNAGAS 2356 Query: 126 VAQTATITITGS--NDAPIVVNDFI-QTSTDSGLY 157 V+ T+T+ S NDAP + N QT+T+ + Sbjct: 2357 VSDVFTLTVANSDTNDAPTLENAIANQTATEDSAF 2391 Score = 53.1 bits (126), Expect = 3e-008 Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 17/186 (9%) Query: 5 ESEVITYSYDVEDGNGGSVAQTATITITGSNDTPXXXXXXXXXXXEDDAAYSLNLLSNA- 63 E I D G S++ T+T+ +ND P +D A++ + ++A Sbjct: 2442 EVGTINIKVTATDNAGASLSDIFTLTVINTNDAPTVANAIANQTATEDTAFNFQIPADAF 2501 Query: 64 SDADISDTLNVNNLTLLSGD--ASGITVSGNALSIDPNAYNTLAAGESEVITYSYDV--E 119 +D D DTL TL +GD S +T + N SEV T S V Sbjct: 2502 NDVDTGDTLTY-TATLENGDELPSWLTFDAATRTFSGTPTN------SEVDTLSIKVIAT 2554 Query: 120 DGNGGSVAQTATITITGSNDAPIVVNDFI-QTSTDSGLYAEFYGYNDNTDGGNLTNVDQV 178 D + S + T+T+ +NDAP + N QT+T+ ++ N D + D + Sbjct: 2555 DKSQASASNVFTLTVLNTNDAPTLENAIADQTATEDSTFSFIIPVNTFAD----VDADDI 2610 Query: 179 KAFIAT 184 A+ AT Sbjct: 2611 LAYSAT 2616 Score = 51.6 bits (122), Expect = 9e-008 Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 22/191 (11%) Query: 17 DGNGGSVAQTATITITG--SNDTPXXXXXXXXXXXEDDAAYSLNLLSNA-SDADISDTLN 73 D G SV+ T+T+ +ND P +D+A++ + +N +D D DTL Sbjct: 2351 DNAGASVSDVFTLTVANSDTNDAPTLENAIANQTATEDSAFTFTIPANTFADVDAGDTLT 2410 Query: 74 VNNLTLLSGDASGITVSGNALSIDPNA---YNTLAAGESEVITYSYDVEDGNGGSVAQTA 130 + D N L+ +P+ T E I D G S++ Sbjct: 2411 YSATLADGADLL------NWLNFNPSTRTFSGTPTNDEVGTINIKVTATDNAGASLSDIF 2464 Query: 131 TITITGSNDAPIVVNDFI-QTSTDSGLY---AEFYGYNDNTDGGNLT------NVDQVKA 180 T+T+ +NDAP V N QT+T+ + +ND G LT N D++ + Sbjct: 2465 TLTVINTNDAPTVANAIANQTATEDTAFNFQIPADAFNDVDTGDTLTYTATLENGDELPS 2524 Query: 181 FIATNNADATF 191 ++ + A TF Sbjct: 2525 WLTFDAATRTF 2535 Score = 43.5 bits (101), Expect = 2e-005 Identities = 44/148 (29%), Positives = 66/148 (43%), Gaps = 16/148 (10%) Query: 6 SEVITYSYDV--EDGNGGSVAQTATITITGSNDTPXXXXXXXXXXXEDDAAYSLNLLSNA 63 SEV T S V D + S + T+T+ +ND P +D+ +S + N Sbjct: 2542 SEVDTLSIKVIATDKSQASASNVFTLTVLNTNDAPTLENAIADQTATEDSTFSFIIPVNT 2601 Query: 64 -SDADISDTLNVNNLTLLSGDASGITVSGNALSIDPNAYNTLAAG---ESEVITYSYDV- 118 +D D D L + TL G A + L+ +P N AG SEV T + V Sbjct: 2602 FADVDADDIL-AYSATLEEGAALP-----SWLTFNPT--NRTFAGTPINSEVGTLNIKVI 2653 Query: 119 -EDGNGGSVAQTATITITGSNDAPIVVN 145 D + +V+ T+T+ +NDAPI+ N Sbjct: 2654 ATDKSSANVSDVFTLTVANTNDAPILAN 2681 >alr0276 (2349 aa) 298527-> hypothetical protein Length = 2348 Score = 50.4 bits (119), Expect = 2e-007 Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 11/181 (6%) Query: 31 ITGSNDTPXXXXXXXXXXXEDDAAYSLNLLSNASDADISDTLNVNNLTLLSGDASGITVS 90 I G N ++ A ++N+L+N SD + D+L L+L+S +G+ V Sbjct: 2050 IVGLNLNTAPIAVNDIATTNENTAVNINVLTNDSDVN-GDSLQ---LSLVSNPVNGVAVV 2105 Query: 91 GNALS----IDPNAYNTLAAGESEVITYSYDVEDGNGGSVAQTATITITGSNDAPIVVND 146 + + D T G +++Y + DG GG+ T ++TI S ++ Sbjct: 2106 NDNGTPGNFADDFITYTPNTGYLGNDSFTYSISDGKGGTATATVSLTINASGGIIGTPDN 2165 Query: 147 FIQTSTDSGLYAEFYGYNDNTDGGNLTNV---DQVKAFIATNNADATFIAGDINYGVVSG 203 I T T+ G ND GGN + D+ K + N + T GD N ++ G Sbjct: 2166 DILTGTNRNDLIRGLGGNDLLIGGNGNDTLYGDRGKDILLGGNGNDTLYGGDDNDTLIGG 2225 Query: 204 N 204 N Sbjct: 2226 N 2226 >all2655 (3263 aa) <-3222397 unknown protein Length = 3262 Score = 43.5 bits (101), Expect = 2e-005 Identities = 54/213 (25%), Positives = 84/213 (39%), Gaps = 27/213 (12%) Query: 10 TYSYDVEDGNGGSVAQTATITITGS----NDTPXXXXXXXXXXXEDD--AAYSLNLLSNA 63 +++Y D S T +IT+T ND P + A + +LSN Sbjct: 310 SFTYLANDTKANSAPATVSITVTAPPPPPNDPPVTVNDNYSTQADQQLVVAVANGVLSND 369 Query: 64 SDADISDTLNVNNLTLLSGDASGITVSGNALSIDPNAYNTLAAGESEVITYSYDVEDGNG 123 +DA SD L + S + + G+ + PNA G +++Y D Sbjct: 370 TDAQ-SDPLTAAVVQAPSNGSVTLNPDGS-FAYTPNA------GFVGTDSFTYLANDTKV 421 Query: 124 GSVAQTATITITGS----NDAPIVVNDFIQTSTDSGLYAEFYG--YNDNTDGGNLTNVDQ 177 S T IT+T ND P+ VND T+ D L + +++TD + D Sbjct: 422 NSAPATVNITVTAPPPPPNDPPVAVNDSYSTTADQALVVDAANGVLSNDTDAQS----DP 477 Query: 178 VKAFI--ATNNADATF-IAGDINYGVVSGNLGT 207 + A + A +N TF G Y +G +GT Sbjct: 478 LTAAVAQAPSNGSVTFNTDGSFTYTPNAGFVGT 510 >alr7304 (4937 aa) 316783-> similar to hlyA Length = 4936 Score = 38.5 bits (88), Expect = 8e-004 Identities = 42/177 (23%), Positives = 71/177 (39%), Gaps = 30/177 (16%) Query: 4 GESEVITYSYDVE--DGNGGSVAQTATITITGSNDTPXXXXXXXXXXXEDDAAYSLNL-L 60 G S V T + V D G SV + T+T+ +ND P + ++ + L Sbjct: 4017 GNSNVGTVNITVTATDSTGASVDDSFTLTVANTNDAPILGLAIADQSTASNTPFTFQIPL 4076 Query: 61 SNASDADISDTL--------NVNNLTLLSGDASGITVSGNALSIDPNAYNTLAAGESEVI 112 + SD D DTL ++ T L+ +A+ T SG ++D N Sbjct: 4077 NTFSDIDTGDTLTYSAKLVGDIPLPTWLTFNATNRTFSGIPGNVDVGTLN---------- 4126 Query: 113 TYSYDVEDGNGGSVAQTATITITGSNDAPIVVNDFIQTSTDSGLYAEFYGYNDNTDG 169 + D + S++ + +TIT ++N+ + TS ++ L NDN G Sbjct: 4127 -ITVQAIDTSNASISDSFVLTITN------LINNIVGTSGNNTLAGT--PNNDNIQG 4174 Score = 38.1 bits (87), Expect = 0.001 Identities = 49/200 (24%), Positives = 78/200 (38%), Gaps = 23/200 (11%) Query: 34 SNDTPXXXXXXXXXXXEDDAAYSLNLLSNAS-DADISDTLNVNNL--TLLSGDASGITVS 90 +N P +DA ++ + +N DAD D L + + L+ +A+ T S Sbjct: 3954 TNQAPTVANAIADQIINEDANFTFVIPANTFVDADAGDVLTYSTTLPSWLTFNATTRTFS 4013 Query: 91 GNALSIDPNAYNTLAAGESEVITYSYDVE--DGNGGSVAQTATITITGSNDAPIVVNDFI 148 G G S V T + V D G SV + T+T+ +NDAPI+ Sbjct: 4014 GTP-------------GNSNVGTVNITVTATDSTGASVDDSFTLTVANTNDAPILGLAIA 4060 Query: 149 QTSTDSGLYAEFY----GYNDNTDGGNLTNVDQVKAFIATNNADATFIAGDINYGVVSGN 204 ST S F ++D G LT ++ I TF A + + + GN Sbjct: 4061 DQSTASNTPFTFQIPLNTFSDIDTGDTLTYSAKLVGDIPLPTW-LTFNATNRTFSGIPGN 4119 Query: 205 LGTGTTLPSFLGADAASLSM 224 + GT + D ++ S+ Sbjct: 4120 VDVGTLNITVQAIDTSNASI 4139 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.307 0.128 0.344 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 838244 Number of Sequences: 6135 Number of extensions: 35323 Number of successful extensions: 91 Number of sequences better than 1.0e-003: 4 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 66 Number of HSP's gapped (non-prelim): 20 length of query: 227 length of database: 1,969,620 effective HSP length: 49 effective length of query: 178 effective length of database: 1,669,005 effective search space: 297082890 effective search space used: 297082890 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (22.0 bits) S2: 87 (38.1 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 13:6.15-134 reverse Length: 40 Class: 2 (39 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value alr3505 (1300 aa) 4222175-> unknown protein 51 2e-008 >alr3505 (1300 aa) 4222175-> unknown protein Length = 1299 Score = 51.2 bits (121), Expect = 2e-008 Identities = 19/24 (79%), Positives = 20/24 (83%) Query: 1 LWNNTQSIWTGGVDSQGHWNVIWL 24 LWNN Q IW GGV+SQ HWNVIWL Sbjct: 592 LWNNAQPIWAGGVESQAHWNVIWL 615 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.319 0.136 0.523 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 153712 Number of Sequences: 6135 Number of extensions: 2737 Number of successful extensions: 6 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 1 length of query: 39 length of database: 1,969,620 effective HSP length: 15 effective length of query: 24 effective length of database: 1,877,595 effective search space: 45062280 effective search space used: 45062280 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 14:6.225-662 reverse Length: 146 Class: 2 (145 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.324 0.136 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 503584 Number of Sequences: 6135 Number of extensions: 15079 Number of successful extensions: 34 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 0 length of query: 145 length of database: 1,969,620 effective HSP length: 38 effective length of query: 107 effective length of database: 1,736,490 effective search space: 185804430 effective search space used: 185804430 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 86 (37.7 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 15:7.128-424 direct Length: 99 Class: 1 (98 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.321 0.137 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 389522 Number of Sequences: 6135 Number of extensions: 13785 Number of successful extensions: 36 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 0 length of query: 98 length of database: 1,969,620 effective HSP length: 38 effective length of query: 60 effective length of database: 1,736,490 effective search space: 104189400 effective search space used: 104189400 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 16:7.758-874 reverse Length: 39 Class: 1 (38 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value alr2485 (567 aa) 2985297-> NH(3)-dependent NAD(+) synthetase 38 2e-004 >alr2485 (567 aa) 2985297-> NH(3)-dependent NAD(+) synthetase Length = 566 Score = 37.7 bits (86), Expect = 2e-004 Identities = 16/30 (53%), Positives = 21/30 (69%) Query: 5 EYKRRQAAVGIRISKRAFGRDRRYPITNGW 34 E+KRRQA G++I+ RAFG R PI + W Sbjct: 524 EFKRRQAPPGLKITDRAFGTGWRMPIASNW 553 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.323 0.142 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 140493 Number of Sequences: 6135 Number of extensions: 2746 Number of successful extensions: 6 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 1 length of query: 38 length of database: 1,969,620 effective HSP length: 14 effective length of query: 24 effective length of database: 1,883,730 effective search space: 45209520 effective search space used: 45209520 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 17:8.91-249 direct Length: 53 Class: 1 (52 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value all4523 (202 aa) <-5414360 hypothetical protein 110 2e-026 all1783 (202 aa) <-2143064 hypothetical protein 105 1e-024 >all4523 (202 aa) <-5414360 hypothetical protein Length = 201 Score = 110 bits (275), Expect = 2e-026 Identities = 52/52 (100%), Positives = 52/52 (100%) Query: 1 VTVADVWSRCGDSVNMRVNAAMTASGQGMATVDSFDLAHRGLVYHIKYRQCR 52 VTVADVWSRCGDSVNMRVNAAMTASGQGMATVDSFDLAHRGLVYHIKYRQCR Sbjct: 150 VTVADVWSRCGDSVNMRVNAAMTASGQGMATVDSFDLAHRGLVYHIKYRQCR 201 >all1783 (202 aa) <-2143064 hypothetical protein Length = 201 Score = 105 bits (261), Expect = 1e-024 Identities = 48/52 (92%), Positives = 51/52 (97%) Query: 1 VTVADVWSRCGDSVNMRVNAAMTASGQGMATVDSFDLAHRGLVYHIKYRQCR 52 VTV +VWSRCGDSVNMRVNAAMTASGQGMATVDSFDLAHRGLVYH+KYR+CR Sbjct: 150 VTVGNVWSRCGDSVNMRVNAAMTASGQGMATVDSFDLAHRGLVYHVKYRKCR 201 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.325 0.132 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 173099 Number of Sequences: 6135 Number of extensions: 3930 Number of successful extensions: 20 Number of sequences better than 1.0e-003: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 2 length of query: 52 length of database: 1,969,620 effective HSP length: 28 effective length of query: 24 effective length of database: 1,797,840 effective search space: 43148160 effective search space used: 43148160 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 18:8.515-694 reverse Length: 60 Class: 2 (59 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value all4523 (202 aa) <-5414360 hypothetical protein 37 3e-004 all1783 (202 aa) <-2143064 hypothetical protein 37 3e-004 >all4523 (202 aa) <-5414360 hypothetical protein Length = 201 Score = 37.4 bits (85), Expect = 3e-004 Identities = 18/23 (78%), Positives = 19/23 (82%) Query: 18 DAPMTASGQGMAAVDSFDLAQVG 40 +A MTASGQGMA VDSFDLA G Sbjct: 168 NAAMTASGQGMATVDSFDLAHRG 190 >all1783 (202 aa) <-2143064 hypothetical protein Length = 201 Score = 37.4 bits (85), Expect = 3e-004 Identities = 18/23 (78%), Positives = 19/23 (82%) Query: 18 DAPMTASGQGMAAVDSFDLAQVG 40 +A MTASGQGMA VDSFDLA G Sbjct: 168 NAAMTASGQGMATVDSFDLAHRG 190 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.326 0.136 0.460 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 230910 Number of Sequences: 6135 Number of extensions: 6369 Number of successful extensions: 16 Number of sequences better than 1.0e-003: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 2 length of query: 59 length of database: 1,969,620 effective HSP length: 32 effective length of query: 27 effective length of database: 1,773,300 effective search space: 47879100 effective search space used: 47879100 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 19:9.172-318 reverse Length: 49 Class: 2 (48 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.323 0.131 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 151900 Number of Sequences: 6135 Number of extensions: 3245 Number of successful extensions: 8 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 48 length of database: 1,969,620 effective HSP length: 24 effective length of query: 24 effective length of database: 1,822,380 effective search space: 43737120 effective search space used: 43737120 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20:9.317-682 direct Length: 122 Class: 2 (121 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value alr1856 (114 aa) 2220384-> unknown protein 38 6e-004 >alr1856 (114 aa) 2220384-> unknown protein Length = 113 Score = 37.7 bits (86), Expect = 6e-004 Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 6/99 (6%) Query: 17 KRPGMYVEEISFKSVATHLEGYF-----VGLMSLTDTKMFSSWRYWVAMKYGIWDCAWSW 71 KRP MY+ S S+ L+GY+ +G+ + F ++ W+ ++ + + W Sbjct: 13 KRPAMYLGRNSIFSLQAFLDGYYFARREIGINLTEEEVEFQNFLQWIRHRFNV-ETGQLW 71 Query: 72 SRTIRSSVDTDDEAIAMLPILFKEFIEKYRTSSDLKIEE 110 S I + A+ LF+EF ++++ KI++ Sbjct: 72 SSIILFHSADEKSAVDRFFTLFEEFNQQHKNQEIEKIDQ 110 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.323 0.135 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 466373 Number of Sequences: 6135 Number of extensions: 15850 Number of successful extensions: 38 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 1 length of query: 121 length of database: 1,969,620 effective HSP length: 37 effective length of query: 84 effective length of database: 1,742,625 effective search space: 146380500 effective search space used: 146380500 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 85 (37.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 21:10.1-279 reverse Length: 97 Class: 1 (96 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value alr0533 (201 aa) 624239-> CpcF: phycocyanobilin lyase beta s... 169 1e-043 >alr0533 (201 aa) 624239-> CpcF: phycocyanobilin lyase beta subunit Length = 200 Score = 169 bits (427), Expect = 1e-043 Identities = 88/91 (96%), Positives = 90/91 (98%) Query: 1 MTDELINGVALADTPEKLVKAVQELALAKDVAAIPTLIAVFGYNNPTAAAIASTALVQMG 60 MT+ELINGVALADTPEKLVKAVQELALAKDVAAIPTLIAVFGYNNPTAAAIASTALVQ+G Sbjct: 1 MTNELINGVALADTPEKLVKAVQELALAKDVAAIPTLIAVFGYNNPTAAAIASTALVQLG 60 Query: 61 EVAVPHLLTQIDDYNYGARAYSIRTLAAIAD 91 EVAVP LLTQIDDYNYGARAYSIRTLAAIAD Sbjct: 61 EVAVPQLLTQIDDYNYGARAYSIRTLAAIAD 91 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.317 0.132 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 344994 Number of Sequences: 6135 Number of extensions: 11257 Number of successful extensions: 68 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 1 length of query: 96 length of database: 1,969,620 effective HSP length: 45 effective length of query: 51 effective length of database: 1,693,545 effective search space: 86370795 effective search space used: 86370795 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 83 (36.6 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 22:10.579-749 reverse Length: 57 Class: 2 (56 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.330 0.143 0.460 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 215664 Number of Sequences: 6135 Number of extensions: 6049 Number of successful extensions: 18 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 56 length of database: 1,969,620 effective HSP length: 32 effective length of query: 24 effective length of database: 1,773,300 effective search space: 42559200 effective search space used: 42559200 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 23:11.833-905 direct Length: 26 Class: 2 (25 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.349 0.160 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 0 Number of Sequences: 6135 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 25 length of database: 1,969,620 effective HSP length: 1 effective length of query: 24 effective length of database: 1,963,485 effective search space: 47123640 effective search space used: 47123640 T: 11 A: 40 X1: 14 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 38 (21.8 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 24:12.1-208 reverse Length: 72 Class: 2 (71 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value all1075 (295 aa) <-1259231 parA family protein 40 5e-005 >all1075 (295 aa) <-1259231 parA family protein Length = 294 Score = 40.0 bits (92), Expect = 5e-005 Identities = 18/21 (85%), Positives = 20/21 (94%) Query: 1 LAGIQLLERRIGQLKDSHEQE 21 + GIQLLERRIGQLK+SHEQE Sbjct: 188 VVGIQLLERRIGQLKESHEQE 208 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.323 0.144 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 121622 Number of Sequences: 6135 Number of extensions: 1029 Number of successful extensions: 1 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1 length of query: 71 length of database: 1,969,620 effective HSP length: 36 effective length of query: 35 effective length of database: 1,748,760 effective search space: 61206600 effective search space used: 61206600 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 82 (36.2 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 25:12.225-548 direct Length: 108 Class: 1 (107 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value all1075 (295 aa) <-1259231 parA family protein 207 4e-055 >all1075 (295 aa) <-1259231 parA family protein Length = 294 Score = 207 bits (527), Expect = 4e-055 Identities = 105/107 (98%), Positives = 107/107 (99%) Query: 1 VVGIQLLERRIGQLKDSHEQEAKINIKMLGIVFNMCNTNLLTGRYYKQVMHRVVEDFGVE 60 VVGIQLLERRIGQLK+SHEQEAKINIKMLGIVF+MCNTNLLTGRYYKQVMHRVVEDFGVE Sbjct: 188 VVGIQLLERRIGQLKESHEQEAKINIKMLGIVFSMCNTNLLTGRYYKQVMHRVVEDFGVE 247 Query: 61 QICKAQIPVDINVAKAVDSFMPAVLNAPQSAGSKAFLQLTQELLQKL 107 QICKAQIPVDINVAKAVDSFMPAVLNAPQSAGSKAFLQLTQELLQKL Sbjct: 248 QICKAQIPVDINVAKAVDSFMPAVLNAPQSAGSKAFLQLTQELLQKL 294 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.322 0.137 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 373096 Number of Sequences: 6135 Number of extensions: 13117 Number of successful extensions: 33 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 1 length of query: 107 length of database: 1,969,620 effective HSP length: 42 effective length of query: 65 effective length of database: 1,711,950 effective search space: 111276750 effective search space used: 111276750 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 26:13.164-763 reverse Length: 200 Class: 1 (199 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value all4414 (694 aa) <-5293892 unknown protein 292 3e-080 all3927 (864 aa) <-4742331 unknown protein 65 7e-012 all4413 (743 aa) <-5291696 unknown protein 49 4e-007 >all4414 (694 aa) <-5293892 unknown protein Length = 693 Score = 292 bits (747), Expect = 3e-080 Identities = 150/159 (94%), Positives = 153/159 (95%) Query: 33 VVNQVATDKFIQDLERVSQVRSKIAISLQKLSDTINQAELAGDTPSGKLSLERDLEDISV 92 VVNQVATDKFIQDLERV+QVRSKIA+ LQKLSDTINQAELAGDT SGKLSLERDLEDISV Sbjct: 1 VVNQVATDKFIQDLERVAQVRSKIAVCLQKLSDTINQAELAGDTSSGKLSLERDLEDISV 60 Query: 93 ASNNLKKGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCPAVLTVLRYGAEKKVTIY 152 AS NLKKGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPC AVLTVLRYGAEKKVTI+ Sbjct: 61 ASKNLKKGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGAEKKVTIH 120 Query: 153 FNDGKSPQTLDFPSFKYKYTIDPAEAKKLEQEKKSAFPD 191 FNDGKSPQTLDF SFKYKYTIDPAEAKKLEQEKK AFPD Sbjct: 121 FNDGKSPQTLDFQSFKYKYTIDPAEAKKLEQEKKQAFPD 159 >all3927 (864 aa) <-4742331 unknown protein Length = 863 Score = 65.1 bits (157), Expect = 7e-012 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 2/114 (1%) Query: 61 QKLSDTINQAELAGDTPSGKLSLERDL-EDISVASNNLKKGVFRLLVLGDMKRGKSTFLN 119 Q+L + NQ T L +DL ++++ S + FRL V+G+ +GKST LN Sbjct: 223 QQLGNYCNQISQIVQTCHELGFLAKDLIDEVNGLSKKFQLHRFRLAVIGEFSQGKSTLLN 282 Query: 120 ALIGENLLPSDVNPCPAVLTVLRYGAEKKVTIYFNDGKSPQTLDFPSFKYKYTI 173 AL+GE + P PC + VL+YG +K+V + DG S + + F ++ K +I Sbjct: 283 ALLGEEIQPMREIPCNGNIVVLKYGTQKRVIYRYKDG-SEKEIPFDEYRQKVSI 335 >all4413 (743 aa) <-5291696 unknown protein Length = 742 Score = 49.3 bits (116), Expect = 4e-007 Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 3/82 (3%) Query: 78 SGKLSLERDL---EDISVASNNLKKGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPC 134 SG L LER +D+ L+ FR+ V G GKST LNA++G LP D+ P Sbjct: 18 SGLLGLERTSRLHQDLVSICGYLENPNFRIAVFGPFNHGKSTLLNAVLGSRALPIDLIPT 77 Query: 135 PAVLTVLRYGAEKKVTIYFNDG 156 ++YG+ + I DG Sbjct: 78 TGAAITVKYGSSVRSRIMLVDG 99 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.315 0.133 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 727152 Number of Sequences: 6135 Number of extensions: 28439 Number of successful extensions: 92 Number of sequences better than 1.0e-003: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89 Number of HSP's gapped (non-prelim): 3 length of query: 199 length of database: 1,969,620 effective HSP length: 46 effective length of query: 153 effective length of database: 1,687,410 effective search space: 258173730 effective search space used: 258173730 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 87 (38.1 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 27:14.271-540 direct Length: 90 Class: 2 (89 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.336 0.153 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 246575 Number of Sequences: 6135 Number of extensions: 7958 Number of successful extensions: 56 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 0 length of query: 89 length of database: 1,969,620 effective HSP length: 36 effective length of query: 53 effective length of database: 1,748,760 effective search space: 92684280 effective search space used: 92684280 T: 11 A: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 83 (36.6 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 28:14.639-839 direct Length: 67 Class: 2 (66 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.315 0.132 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 250735 Number of Sequences: 6135 Number of extensions: 7337 Number of successful extensions: 16 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 66 length of database: 1,969,620 effective HSP length: 38 effective length of query: 28 effective length of database: 1,736,490 effective search space: 48621720 effective search space used: 48621720 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 29:15.125-319 reverse Length: 65 Class: 1 (64 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value alr4166 (382 aa) 5012632-> amino acid ABC transporter, perme... 114 2e-027 >alr4166 (382 aa) 5012632-> amino acid ABC transporter, permease protein Length = 381 Score = 114 bits (286), Expect = 2e-027 Identities = 55/64 (85%), Positives = 59/64 (91%) Query: 1 MIKLTGLRKNLFSTGYDSLLNVICSALLLWLVQGIVIWATTKAQWAVVQVNLRLFLVGRF 60 M KLT LRKNLFST Y+SLL VICSAL LWLVQGI++WATTKAQWAV+QVNLRLFLVGRF Sbjct: 1 MTKLTWLRKNLFSTWYNSLLTVICSALSLWLVQGIIVWATTKAQWAVIQVNLRLFLVGRF 60 Query: 61 PQTE 64 PQTE Sbjct: 61 PQTE 64 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.329 0.140 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 251803 Number of Sequences: 6135 Number of extensions: 7177 Number of successful extensions: 35 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 1 length of query: 64 length of database: 1,969,620 effective HSP length: 33 effective length of query: 31 effective length of database: 1,767,165 effective search space: 54782115 effective search space used: 54782115 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 30:15.357-617 reverse Length: 87 Class: 2 (86 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value alr4165 (309 aa) 5011668-> amino acid ABC transporter, perme... 55 2e-009 >alr4165 (309 aa) 5011668-> amino acid ABC transporter, permease protein Length = 308 Score = 55.5 bits (132), Expect = 2e-009 Identities = 34/72 (47%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Query: 15 VTGRCGDFTKNCILGIAMGYPDMWLCGIHLFYIERGKAVAVRLLRKVLGLCFRLRARFPM 74 +T + + TKN L IA+GYPD++ F + GKAV V LL + L L M Sbjct: 238 LTSQYLNLTKNSSLAIAIGYPDIYFVASTTFN-QTGKAVEVMLLLMLTYLSLSLTISLIM 296 Query: 75 NAFNRTVQIKER 86 NAFNRTVQIKER Sbjct: 297 NAFNRTVQIKER 308 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.333 0.146 0.476 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 311658 Number of Sequences: 6135 Number of extensions: 10299 Number of successful extensions: 20 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 1 length of query: 86 length of database: 1,969,620 effective HSP length: 33 effective length of query: 53 effective length of database: 1,767,165 effective search space: 93659745 effective search space used: 93659745 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 83 (36.6 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 31:16.1-347 reverse Length: 117 Class: 2 (116 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value all3375 (958 aa) <-4086891 cation-transporting ATPase 158 3e-040 >all3375 (958 aa) <-4086891 cation-transporting ATPase Length = 957 Score = 158 bits (399), Expect = 3e-040 Identities = 78/79 (98%), Positives = 78/79 (98%) Query: 22 LQNYGPNELEEHGGRSAWEILFDQFKNIMLLMLIAVAFISGSLDFISWQAGELKPGEIPF 81 LQ YGPNELEEHGGRSAWEILFDQFKNIMLLMLIAVAFISGSLDFISWQAGELKPGEIPF Sbjct: 46 LQKYGPNELEEHGGRSAWEILFDQFKNIMLLMLIAVAFISGSLDFISWQAGELKPGEIPF 105 Query: 82 KDTIAILAIVILNGILGYV 100 KDTIAILAIVILNGILGYV Sbjct: 106 KDTIAILAIVILNGILGYV 124 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.325 0.142 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 437500 Number of Sequences: 6135 Number of extensions: 16032 Number of successful extensions: 42 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 1 length of query: 116 length of database: 1,969,620 effective HSP length: 36 effective length of query: 80 effective length of database: 1,748,760 effective search space: 139900800 effective search space used: 139900800 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 85 (37.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 32:16.351-770 direct Length: 140 Class: 1 (139 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value all3375 (958 aa) <-4086891 cation-transporting ATPase 208 3e-055 all3245 (996 aa) <-3922362 cation-transporting ATPase 43 2e-005 alr3723 (912 aa) 4493940-> cation-transporting P-type ATPase 40 1e-004 >all3375 (958 aa) <-4086891 cation-transporting ATPase Length = 957 Score = 208 bits (529), Expect = 3e-055 Identities = 105/105 (100%), Positives = 105/105 (100%) Query: 1 LEVDKALGLLNSNADSGLTTEEVEQRLQKYGPNELEEHGGRSAWEILFDQFKNIMLLMLI 60 LEVDKALGLLNSNADSGLTTEEVEQRLQKYGPNELEEHGGRSAWEILFDQFKNIMLLMLI Sbjct: 20 LEVDKALGLLNSNADSGLTTEEVEQRLQKYGPNELEEHGGRSAWEILFDQFKNIMLLMLI 79 Query: 61 AVAFISGSLDFISWQAGELKPGEIPFKDTIAILAIVILNGILGYV 105 AVAFISGSLDFISWQAGELKPGEIPFKDTIAILAIVILNGILGYV Sbjct: 80 AVAFISGSLDFISWQAGELKPGEIPFKDTIAILAIVILNGILGYV 124 >all3245 (996 aa) <-3922362 cation-transporting ATPase Length = 995 Score = 42.7 bits (99), Expect = 2e-005 Identities = 29/89 (32%), Positives = 45/89 (49%), Gaps = 14/89 (15%) Query: 16 SGLTTEEVEQRLQKYGPNELEEHGGRSAWEILFDQFKNIMLLMLIAVAFISGSLDFISWQ 75 SGL++E L YG N L E RS++ IL DQFK++ + +L A +S + Sbjct: 126 SGLSSESAAANLSIYGANILSETEIRSSFSILVDQFKSLPVALLGVAAGVS------VFT 179 Query: 76 AGELKPGEIPFKDTIAILAIVILNGILGY 104 G + D + IL +V +N ++GY Sbjct: 180 GGLI--------DAVVILGVVGVNAVIGY 200 >alr3723 (912 aa) 4493940-> cation-transporting P-type ATPase Length = 911 Score = 40.4 bits (93), Expect = 1e-004 Identities = 27/105 (25%), Positives = 51/105 (47%), Gaps = 14/105 (13%) Query: 1 LEVDKALGLLNSNADSGLTTEEVEQRLQKYGPNELEEHGGRSAWEILFDQFKNIMLLMLI 60 L K L++N D+GLT+ ++ +R + +G NEL+ G S QF +L +L+ Sbjct: 17 LSASKVAQYLDANLDTGLTSNQIAKRQESFGANELKGKKGTSPIVRFLLQFNQPLLYILL 76 Query: 61 AVAFISGSLDFISWQAGELKPGEIPFKDTIAILAIVILNGILGYV 105 I+G++ + Q + + I + ++N I+G+V Sbjct: 77 ----IAGAIKALIGQ----------WVNAWVIWGVTLINAIIGFV 107 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.319 0.141 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 432580 Number of Sequences: 6135 Number of extensions: 16246 Number of successful extensions: 42 Number of sequences better than 1.0e-003: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 3 length of query: 139 length of database: 1,969,620 effective HSP length: 41 effective length of query: 98 effective length of database: 1,718,085 effective search space: 168372330 effective search space used: 168372330 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 85 (37.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 33:17.193-789 direct Length: 199 Class: 2 (198 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.332 0.143 0.465 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 687967 Number of Sequences: 6135 Number of extensions: 23588 Number of successful extensions: 78 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78 Number of HSP's gapped (non-prelim): 0 length of query: 198 length of database: 1,969,620 effective HSP length: 36 effective length of query: 162 effective length of database: 1,748,760 effective search space: 283299120 effective search space used: 283299120 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 34:18.76-264 reverse Length: 63 Class: 2 (62 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.316 0.129 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 255187 Number of Sequences: 6135 Number of extensions: 7370 Number of successful extensions: 13 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 0 length of query: 62 length of database: 1,969,620 effective HSP length: 38 effective length of query: 24 effective length of database: 1,736,490 effective search space: 41675760 effective search space used: 41675760 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 35:19.9-140 reverse Length: 44 Class: 2 (43 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.351 0.153 0.477 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12237 Number of Sequences: 6135 Number of extensions: 12 Number of successful extensions: 0 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 43 length of database: 1,969,620 effective HSP length: 19 effective length of query: 24 effective length of database: 1,853,055 effective search space: 44473320 effective search space used: 44473320 T: 11 A: 40 X1: 14 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 38 (21.9 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 36:19.439-799 direct Length: 122 Class: 1 (121 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value alr1575 (1048 aa) 1839677-> unknown protein 234 4e-063 >alr1575 (1048 aa) 1839677-> unknown protein Length = 1047 Score = 234 bits (597), Expect = 4e-063 Identities = 112/120 (93%), Positives = 116/120 (96%) Query: 1 MNKFKSAFISYGRADSKAFATKLYQRFVEAGLEIWFDQNDIPLGVDFQNQIDDGIEKSDN 60 MNKFKSAFISYGRADSKAFATKL+QRFVEAGL+IWFDQNDIPLGVDFQNQIDDGIEKSDN Sbjct: 1 MNKFKSAFISYGRADSKAFATKLHQRFVEAGLDIWFDQNDIPLGVDFQNQIDDGIEKSDN 60 Query: 61 FLFIIAPHSVNSPYCGKEIDLALRRNKRIIPLLHVEQIYSETWQQRNPGRDASEWEKYPA 120 FLFIIAPHSVNSPYCGKEIDLALRRNKRIIPLLHVEQI E WQQRNPGR+ASEWE+Y A Sbjct: 61 FLFIIAPHSVNSPYCGKEIDLALRRNKRIIPLLHVEQITQEIWQQRNPGREASEWEQYQA 120 Score = 83.6 bits (205), Expect = 1e-017 Identities = 43/89 (48%), Positives = 57/89 (63%), Gaps = 1/89 (1%) Query: 8 FISYGRADSKAFATKLYQRFVEAGLEIWFDQNDIPLGVDFQNQIDDGIEKSDNFLFIIAP 67 FISY RADS FA KL WFDQ I G +F+ +I GIE ++NFLFII+P Sbjct: 441 FISYSRADSD-FARKLNDTLQIQNKTTWFDQESIASGTNFEQEIYRGIESANNFLFIISP 499 Query: 68 HSVNSPYCGKEIDLALRRNKRIIPLLHVE 96 S++SPYC E++ A+ NKRI+ +L+ E Sbjct: 500 KSLSSPYCTTEVEYAMNLNKRIVTVLYRE 528 Score = 63.2 bits (152), Expect = 1e-011 Identities = 34/101 (33%), Positives = 53/101 (51%), Gaps = 5/101 (4%) Query: 2 NKFKSAFISYGRADSKAFATKLYQRFVEAGLEIWFDQNDIPLGVDFQNQIDDGIEKSDNF 61 N F+SY + + F K+ + + +W ++ DI G DF I+ GIE++DN Sbjct: 233 NLMTQVFLSYSE-NERLFMEKIAKILMRESFTVWTNKTDIQSGADFTESINRGIEEADNV 291 Query: 62 LFIIAPHSVNSPYCGKEIDLALRRNKRIIPLL----HVEQI 98 + +++ S+ S YC E+ A KRIIPLL +EQI Sbjct: 292 VLLLSTASLQSEYCQMELSYAFSLKKRIIPLLIEPVDIEQI 332 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.320 0.138 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 502227 Number of Sequences: 6135 Number of extensions: 19498 Number of successful extensions: 39 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 3 length of query: 121 length of database: 1,969,620 effective HSP length: 37 effective length of query: 84 effective length of database: 1,742,625 effective search space: 146380500 effective search space used: 146380500 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 85 (37.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 37:20.310-855 direct Length: 182 Class: 2 (181 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.320 0.135 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 647696 Number of Sequences: 6135 Number of extensions: 22164 Number of successful extensions: 33 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 0 length of query: 181 length of database: 1,969,620 effective HSP length: 40 effective length of query: 141 effective length of database: 1,724,220 effective search space: 243115020 effective search space used: 243115020 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 38:21.1-131 reverse Length: 45 Class: 2 (44 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.323 0.132 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51534 Number of Sequences: 6135 Number of extensions: 272 Number of successful extensions: 0 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 44 length of database: 1,969,620 effective HSP length: 20 effective length of query: 24 effective length of database: 1,846,920 effective search space: 44326080 effective search space used: 44326080 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 39:21.280-453 reverse Length: 58 Class: 1 (57 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value all1454 (44 aa) <-1700612 ??? 74 3e-015 >all1454 (44 aa) <-1700612 ??? Length = 43 Score = 73.9 bits (180), Expect = 3e-015 Identities = 31/32 (96%), Positives = 31/32 (96%) Query: 15 GPYHGYDGFAIFARDMDLALNSPTWDLIGAPW 46 GPYHGYDGFAIFARDMDLALNSPTW LIGAPW Sbjct: 1 GPYHGYDGFAIFARDMDLALNSPTWSLIGAPW 32 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.326 0.143 0.524 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 206775 Number of Sequences: 6135 Number of extensions: 5643 Number of successful extensions: 12 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 1 length of query: 57 length of database: 1,969,620 effective HSP length: 28 effective length of query: 29 effective length of database: 1,797,840 effective search space: 52137360 effective search space used: 52137360 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 40:21.594-719 reverse Length: 42 Class: 1 (41 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value all1454 (44 aa) <-1700612 ??? 76 5e-016 all1438 (481 aa) <-1697831 nitrogen Fe/Mo cofactor biosynthe... 36 7e-004 >all1454 (44 aa) <-1700612 ??? Length = 43 Score = 76.3 bits (186), Expect = 5e-016 Identities = 0/41 (0%), Positives = 0/41 (0%) Query: 1 LEGNSVILYVGGLRPRHVVPAVEDLGIKVIGTGYEFAHYVD 41 Sbjct: 353 393 >all1438 (481 aa) <-1697831 nitrogen Fe/Mo cofactor biosynthesis E Length = 480 Score = 35.8 bits (81), Expect = 7e-004 Identities = 14/32 (43%), Positives = 23/32 (71%) Query: 1 LEGNSVILYVGGLRPRHVVPAVEDLGIKVIGT 32 L+G V+LY GG++ ++ A +DLGI+V+ T Sbjct: 320 LKGKRVVLYTGGVKSWSIISAAKDLGIEVVAT 351 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.322 0.149 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 167211 Number of Sequences: 6135 Number of extensions: 4079 Number of successful extensions: 9 Number of sequences better than 1.0e-003: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 2 length of query: 41 length of database: 1,969,620 effective HSP length: 17 effective length of query: 24 effective length of database: 1,865,325 effective search space: 44767800 effective search space used: 44767800 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 41:22.1-115 reverse Length: 41 Class: 2 (40 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.335 0.155 0.458 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35370 Number of Sequences: 6135 Number of extensions: 122 Number of successful extensions: 0 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 40 length of database: 1,969,620 effective HSP length: 16 effective length of query: 24 effective length of database: 1,871,460 effective search space: 44915040 effective search space used: 44915040 T: 11 A: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 42:22.276-422 reverse Length: 49 Class: 2 (48 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.322 0.145 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 129489 Number of Sequences: 6135 Number of extensions: 2236 Number of successful extensions: 3 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 0 length of query: 48 length of database: 1,969,620 effective HSP length: 24 effective length of query: 24 effective length of database: 1,822,380 effective search space: 43737120 effective search space used: 43737120 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 43:23.78-272 reverse Length: 65 Class: 2 (64 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.330 0.133 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 196124 Number of Sequences: 6135 Number of extensions: 4722 Number of successful extensions: 15 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 64 length of database: 1,969,620 effective HSP length: 40 effective length of query: 24 effective length of database: 1,724,220 effective search space: 41381280 effective search space used: 41381280 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 44:23.396-527 reverse Length: 44 Class: 2 (43 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.334 0.137 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 112242 Number of Sequences: 6135 Number of extensions: 1924 Number of successful extensions: 14 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 43 length of database: 1,969,620 effective HSP length: 19 effective length of query: 24 effective length of database: 1,853,055 effective search space: 44473320 effective search space used: 44473320 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.7 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 45:23.757-822 reverse Length: 22 Class: 2 (21 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.305 0.117 0.303 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61739 Number of Sequences: 6135 Number of extensions: 602 Number of successful extensions: 5 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 0 length of query: 21 length of database: 1,969,620 effective HSP length: 0 effective length of query: 24 effective length of database: 1,969,620 effective search space: 47270880 effective search space used: 47270880 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 46:24.1-95 reverse Length: 33 Class: 2 (32 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.307 0.127 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62770 Number of Sequences: 6135 Number of extensions: 431 Number of successful extensions: 0 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 32 length of database: 1,969,620 effective HSP length: 8 effective length of query: 24 effective length of database: 1,920,540 effective search space: 46092960 effective search space used: 46092960 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 47:24.82-414 reverse Length: 111 Class: 2 (110 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.321 0.133 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 293915 Number of Sequences: 6135 Number of extensions: 7045 Number of successful extensions: 20 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 0 length of query: 110 length of database: 1,969,620 effective HSP length: 41 effective length of query: 69 effective length of database: 1,718,085 effective search space: 118547865 effective search space used: 118547865 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 48:24.468-551 direct Length: 28 Class: 2 (27 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.325 0.132 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94595 Number of Sequences: 6135 Number of extensions: 1038 Number of successful extensions: 2 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 27 length of database: 1,969,620 effective HSP length: 3 effective length of query: 24 effective length of database: 1,951,215 effective search space: 46829160 effective search space used: 46829160 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 49:24.562-885 reverse Length: 108 Class: 2 (107 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.332 0.141 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 331761 Number of Sequences: 6135 Number of extensions: 9916 Number of successful extensions: 44 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 0 length of query: 107 length of database: 1,969,620 effective HSP length: 38 effective length of query: 69 effective length of database: 1,736,490 effective search space: 119817810 effective search space used: 119817810 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 84 (37.0 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 50:25.1-67 reverse Length: 25 Class: 2 (24 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.318 0.130 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33866 Number of Sequences: 6135 Number of extensions: 85 Number of successful extensions: 0 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 24 length of database: 1,969,620 effective HSP length: 0 effective length of query: 24 effective length of database: 1,969,620 effective search space: 47270880 effective search space used: 47270880 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 51:25.111-656 reverse Length: 182 Class: 1 (181 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value all7629 (464 aa) <-126049 nickel resistance protein 43 3e-005 >all7629 (464 aa) <-126049 nickel resistance protein Length = 463 Score = 43.1 bits (100), Expect = 3e-005 Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 10/154 (6%) Query: 1 MINALDAHARQAFVPELVQRREDIANAMAITWTTINGVRLIAPAIGGLLISWVGVKYCFL 60 + NA QA +P LV D A A+A++ T + ++ P I G + +++G + F Sbjct: 115 VFNAFFTPTYQATIP-LVTSENDYAGAIALSSATYQLLGVLGPGIAGSVAAFIGARQVFF 173 Query: 61 IDGLSYIAVIASLLAMKVKPWTVTRIDGNPLQ-------QVKEGFIYAFSFPPIRAIXXX 113 +D LS+ IA++L + V + P + +K+G + PIR Sbjct: 174 LDALSF--AIAAVLIFTLPGQLVVAQNQQPSRTTRRTWGDIKDGTTRLLTDAPIRYALAM 231 Query: 114 XXXXXXXXXQNTILVPIFAETILKGGAESLGFIM 147 Q + + + LK G G++M Sbjct: 232 QLVASIAGAQILVNTVGYVQGTLKFGEVQYGWVM 265 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.327 0.143 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 542324 Number of Sequences: 6135 Number of extensions: 17698 Number of successful extensions: 54 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 1 length of query: 181 length of database: 1,969,620 effective HSP length: 39 effective length of query: 142 effective length of database: 1,730,355 effective search space: 245710410 effective search space used: 245710410 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 52:26.1-318 reverse Length: 110 Class: 2 (109 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.327 0.138 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 142809 Number of Sequences: 6135 Number of extensions: 1939 Number of successful extensions: 2 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 109 length of database: 1,969,620 effective HSP length: 37 effective length of query: 72 effective length of database: 1,742,625 effective search space: 125469000 effective search space used: 125469000 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 53:27.1-417 reverse Length: 143 Class: 2 (142 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value alr1026 (418 aa) 1196116-> folylpolyglutamate synthase 78 7e-016 >alr1026 (418 aa) 1196116-> folylpolyglutamate synthase Length = 417 Score = 77.8 bits (190), Expect = 7e-016 Identities = 37/46 (80%), Positives = 39/46 (84%) Query: 63 RIAKVVQQFSHNELCQLLLRVQAAICLDDEYPTLFEVITAAAWLYF 108 RI QQ SH+ELCQL+L VQAAIC DDEYPTLFEVITAAAWLYF Sbjct: 79 RICLNEQQISHDELCQLVLTVQAAICFDDEYPTLFEVITAAAWLYF 124 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.326 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 401167 Number of Sequences: 6135 Number of extensions: 11576 Number of successful extensions: 32 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 1 length of query: 142 length of database: 1,969,620 effective HSP length: 41 effective length of query: 101 effective length of database: 1,718,085 effective search space: 173526585 effective search space used: 173526585 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 85 (37.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 54:27.658-783 reverse Length: 42 Class: 2 (41 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.331 0.145 0.560 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 167905 Number of Sequences: 6135 Number of extensions: 3677 Number of successful extensions: 13 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 0 length of query: 41 length of database: 1,969,620 effective HSP length: 17 effective length of query: 24 effective length of database: 1,865,325 effective search space: 44767800 effective search space used: 44767800 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 55:28.572-652 direct Length: 27 Class: 2 (26 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.318 0.135 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94014 Number of Sequences: 6135 Number of extensions: 1166 Number of successful extensions: 0 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 26 length of database: 1,969,620 effective HSP length: 2 effective length of query: 24 effective length of database: 1,957,350 effective search space: 46976400 effective search space used: 46976400 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 56:29.62-113 direct Length: 19 Class: 2 (18 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.307 0.137 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100068 Number of Sequences: 6135 Number of extensions: 1274 Number of successful extensions: 1 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 18 length of database: 1,969,620 effective HSP length: 0 effective length of query: 24 effective length of database: 1,969,620 effective search space: 47270880 effective search space used: 47270880 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.9 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 57:30.416-751 direct Length: 112 Class: 2 (111 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.316 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 441919 Number of Sequences: 6135 Number of extensions: 17679 Number of successful extensions: 27 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 0 length of query: 111 length of database: 1,969,620 effective HSP length: 40 effective length of query: 71 effective length of database: 1,724,220 effective search space: 122419620 effective search space used: 122419620 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 84 (37.0 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 58:30.990-1163 direct Length: 58 Class: 2 (57 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.321 0.133 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 214477 Number of Sequences: 6135 Number of extensions: 5703 Number of successful extensions: 8 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 57 length of database: 1,969,620 effective HSP length: 33 effective length of query: 24 effective length of database: 1,767,165 effective search space: 42411960 effective search space used: 42411960 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 59:30.1259-1498 direct Length: 80 Class: 2 (79 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.324 0.143 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 338813 Number of Sequences: 6135 Number of extensions: 12018 Number of successful extensions: 22 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 0 length of query: 79 length of database: 1,969,620 effective HSP length: 35 effective length of query: 44 effective length of database: 1,754,895 effective search space: 77215380 effective search space used: 77215380 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 82 (36.2 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 60:31.173-427 direct Length: 85 Class: 1 (84 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value alr1785 (820 aa) 2144302-> hypothetical protein 122 7e-030 >alr1785 (820 aa) 2144302-> hypothetical protein Length = 819 Score = 122 bits (307), Expect = 7e-030 Identities = 64/84 (76%), Positives = 66/84 (78%) Query: 1 MSSMPSQCHNLKDQVXXXXXXXXXXXXXXXXDITSVQTSLGKAISPQFEIVFAGAFSAGK 60 MS MP QCHNLK+QV DITSVQTSLGKAISP+FEIVFAGAFSAGK Sbjct: 1 MSGMPLQCHNLKEQVESILQLLQQELSLRSQDITSVQTSLGKAISPKFEIVFAGAFSAGK 60 Query: 61 SMLINALLERELLYSAEGHATGTE 84 SMLINALLERELLYSAEGHATGTE Sbjct: 61 SMLINALLERELLYSAEGHATGTE 84 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.314 0.127 0.344 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 203435 Number of Sequences: 6135 Number of extensions: 5049 Number of successful extensions: 30 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 1 length of query: 84 length of database: 1,969,620 effective HSP length: 46 effective length of query: 38 effective length of database: 1,687,410 effective search space: 64121580 effective search space used: 64121580 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 82 (36.2 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 61:32.47-656 direct Length: 205 Class: 2 (204 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.324 0.140 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 491333 Number of Sequences: 6135 Number of extensions: 11791 Number of successful extensions: 35 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 0 length of query: 204 length of database: 1,969,620 effective HSP length: 39 effective length of query: 165 effective length of database: 1,730,355 effective search space: 285508575 effective search space used: 285508575 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 87 (38.1 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 62:33.2-241 reverse Length: 80 Class: 2 (79 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.320 0.132 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 276829 Number of Sequences: 6135 Number of extensions: 8481 Number of successful extensions: 16 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 79 length of database: 1,969,620 effective HSP length: 41 effective length of query: 38 effective length of database: 1,718,085 effective search space: 65287230 effective search space used: 65287230 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 82 (36.2 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 63:33.345-419 reverse Length: 25 Class: 2 (24 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.328 0.136 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81135 Number of Sequences: 6135 Number of extensions: 947 Number of successful extensions: 1 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 24 length of database: 1,969,620 effective HSP length: 0 effective length of query: 24 effective length of database: 1,969,620 effective search space: 47270880 effective search space used: 47270880 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 64:33.492-731 reverse Length: 80 Class: 2 (79 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.316 0.130 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 270826 Number of Sequences: 6135 Number of extensions: 8290 Number of successful extensions: 14 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 79 length of database: 1,969,620 effective HSP length: 40 effective length of query: 39 effective length of database: 1,724,220 effective search space: 67244580 effective search space used: 67244580 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 82 (36.2 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 65:33.906-1136 direct Length: 77 Class: 2 (76 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.319 0.139 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 228828 Number of Sequences: 6135 Number of extensions: 6742 Number of successful extensions: 13 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 0 length of query: 76 length of database: 1,969,620 effective HSP length: 35 effective length of query: 41 effective length of database: 1,754,895 effective search space: 71950695 effective search space used: 71950695 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 82 (36.2 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 66:33.1231-1449 reverse Length: 73 Class: 2 (72 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.315 0.140 0.461 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 247256 Number of Sequences: 6135 Number of extensions: 6060 Number of successful extensions: 6 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 72 length of database: 1,969,620 effective HSP length: 34 effective length of query: 38 effective length of database: 1,761,030 effective search space: 66919140 effective search space used: 66919140 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 82 (36.2 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 67:33.1439-1633 reverse Length: 65 Class: 2 (64 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.329 0.151 0.536 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 274672 Number of Sequences: 6135 Number of extensions: 9008 Number of successful extensions: 26 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 0 length of query: 64 length of database: 1,969,620 effective HSP length: 29 effective length of query: 35 effective length of database: 1,791,705 effective search space: 62709675 effective search space used: 62709675 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 82 (36.2 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 68:34.1-83 reverse Length: 29 Class: 2 (28 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.311 0.126 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 113891 Number of Sequences: 6135 Number of extensions: 1867 Number of successful extensions: 5 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 0 length of query: 28 length of database: 1,969,620 effective HSP length: 4 effective length of query: 24 effective length of database: 1,945,080 effective search space: 46681920 effective search space used: 46681920 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 69:35.12-287 direct Length: 95 Class: 2 (94 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.311 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 416786 Number of Sequences: 6135 Number of extensions: 15425 Number of successful extensions: 21 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 94 length of database: 1,969,620 effective HSP length: 41 effective length of query: 53 effective length of database: 1,718,085 effective search space: 91058505 effective search space used: 91058505 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 83 (36.6 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 70:36.243-329 direct Length: 29 Class: 1 (28 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.304 0.123 0.303 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93142 Number of Sequences: 6135 Number of extensions: 1326 Number of successful extensions: 1 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 28 length of database: 1,969,620 effective HSP length: 4 effective length of query: 24 effective length of database: 1,945,080 effective search space: 46681920 effective search space used: 46681920 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.9 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 71:37.297-677 direct Length: 127 Class: 1 (126 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value all4193 (127 aa) <-5040430 30S ribosomal protein S13 206 8e-055 >all4193 (127 aa) <-5040430 30S ribosomal protein S13 Length = 126 Score = 206 bits (525), Expect = 8e-055 Identities = 107/126 (84%), Positives = 108/126 (84%) Query: 1 VARIAGVDLPRDKRVEIGLTYIYGIGLSRSQEILAATGVNPDTRVKDLSDADVAALRGEV 60 VARIAGVDLPRDKRVEIGLTYIYGIGLSRSQEI+AATGVNPDTRVKDLSDADVAALRGEV Sbjct: 1 VARIAGVDLPRDKRVEIGLTYIYGIGLSRSQEIIAATGVNPDTRVKDLSDADVAALRGEV 60 Query: 61 ESNYQVEGDLRRLEAMNIKRLVDIGTYRGRRHRMGLPVXXXXXXXXXXXXXXXXXXVAGK 120 ESNYQVEGDLRRLEAMNIKRLVDIGTYRGRRHRMGLPV VAGK Sbjct: 61 ESNYQVEGDLRRLEAMNIKRLVDIGTYRGRRHRMGLPVRGQRTRTNARTRRGRRQTVAGK 120 Query: 121 KKAPGK 126 KKAPGK Sbjct: 121 KKAPGK 126 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.318 0.139 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 393042 Number of Sequences: 6135 Number of extensions: 13647 Number of successful extensions: 45 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 1 length of query: 126 length of database: 1,969,620 effective HSP length: 41 effective length of query: 85 effective length of database: 1,718,085 effective search space: 146037225 effective search space used: 146037225 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 85 (37.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 72:38.1-118 reverse Length: 42 Class: 2 (41 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.318 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 148431 Number of Sequences: 6135 Number of extensions: 3068 Number of successful extensions: 6 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 41 length of database: 1,969,620 effective HSP length: 17 effective length of query: 24 effective length of database: 1,865,325 effective search space: 44767800 effective search space used: 44767800 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 73:40.8-95 direct Length: 31 Class: 2 (30 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.320 0.132 0.534 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57376 Number of Sequences: 6135 Number of extensions: 324 Number of successful extensions: 0 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 30 length of database: 1,969,620 effective HSP length: 6 effective length of query: 24 effective length of database: 1,932,810 effective search space: 46387440 effective search space used: 46387440 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 74:41.676-792 reverse Length: 39 Class: 2 (38 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.322 0.134 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 130298 Number of Sequences: 6135 Number of extensions: 2114 Number of successful extensions: 2 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 38 length of database: 1,969,620 effective HSP length: 14 effective length of query: 24 effective length of database: 1,883,730 effective search space: 45209520 effective search space used: 45209520 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 75:41.1249-1536 reverse Length: 96 Class: 2 (95 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.323 0.143 0.457 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 424186 Number of Sequences: 6135 Number of extensions: 16673 Number of successful extensions: 37 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 95 length of database: 1,969,620 effective HSP length: 35 effective length of query: 60 effective length of database: 1,754,895 effective search space: 105293700 effective search space used: 105293700 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 76:42.1-235 reverse Length: 81 Class: 2 (80 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.324 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 202666 Number of Sequences: 6135 Number of extensions: 5129 Number of successful extensions: 14 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 80 length of database: 1,969,620 effective HSP length: 41 effective length of query: 39 effective length of database: 1,718,085 effective search space: 67005315 effective search space used: 67005315 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 82 (36.2 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 77:43.34-94 direct Length: 22 Class: 2 (21 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.311 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90306 Number of Sequences: 6135 Number of extensions: 1017 Number of successful extensions: 0 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 21 length of database: 1,969,620 effective HSP length: 0 effective length of query: 24 effective length of database: 1,969,620 effective search space: 47270880 effective search space used: 47270880 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 78:44.1-141 reverse Length: 51 Class: 2 (50 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.319 0.132 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 124383 Number of Sequences: 6135 Number of extensions: 2018 Number of successful extensions: 4 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 0 length of query: 50 length of database: 1,969,620 effective HSP length: 26 effective length of query: 24 effective length of database: 1,810,110 effective search space: 43442640 effective search space used: 43442640 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 79:44.378-677 reverse Length: 100 Class: 2 (99 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.326 0.140 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 335607 Number of Sequences: 6135 Number of extensions: 10946 Number of successful extensions: 22 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 0 length of query: 99 length of database: 1,969,620 effective HSP length: 38 effective length of query: 61 effective length of database: 1,736,490 effective search space: 105925890 effective search space used: 105925890 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 84 (37.0 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 80:45.7-66 reverse Length: 20 Class: 2 (19 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.316 0.131 0.347 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58972 Number of Sequences: 6135 Number of extensions: 484 Number of successful extensions: 0 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 19 length of database: 1,969,620 effective HSP length: 0 effective length of query: 24 effective length of database: 1,969,620 effective search space: 47270880 effective search space used: 47270880 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 81:47.57-272 reverse Length: 72 Class: 2 (71 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.322 0.136 0.460 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 301998 Number of Sequences: 6135 Number of extensions: 9364 Number of successful extensions: 11 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 71 length of database: 1,969,620 effective HSP length: 34 effective length of query: 37 effective length of database: 1,761,030 effective search space: 65158110 effective search space used: 65158110 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 82 (36.2 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 82:48.1-187 reverse Length: 65 Class: 2 (64 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.326 0.143 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 235695 Number of Sequences: 6135 Number of extensions: 7038 Number of successful extensions: 13 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 0 length of query: 64 length of database: 1,969,620 effective HSP length: 34 effective length of query: 30 effective length of database: 1,761,030 effective search space: 52830900 effective search space used: 52830900 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 83:50.1-157 reverse Length: 55 Class: 2 (54 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.324 0.142 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 145522 Number of Sequences: 6135 Number of extensions: 2813 Number of successful extensions: 6 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 54 length of database: 1,969,620 effective HSP length: 30 effective length of query: 24 effective length of database: 1,785,570 effective search space: 42853680 effective search space used: 42853680 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 84:50.156-236 direct Length: 30 Class: 2 (29 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.328 0.136 0.332 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31200 Number of Sequences: 6135 Number of extensions: 129 Number of successful extensions: 0 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 29 length of database: 1,969,620 effective HSP length: 5 effective length of query: 24 effective length of database: 1,938,945 effective search space: 46534680 effective search space used: 46534680 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 85:51.27-115 direct Length: 34 Class: 1 (33 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.323 0.128 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89590 Number of Sequences: 6135 Number of extensions: 927 Number of successful extensions: 2 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 33 length of database: 1,969,620 effective HSP length: 9 effective length of query: 24 effective length of database: 1,914,405 effective search space: 45945720 effective search space used: 45945720 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 86:52.1-140 reverse Length: 48 Class: 2 (47 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.324 0.138 0.477 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 180167 Number of Sequences: 6135 Number of extensions: 4435 Number of successful extensions: 8 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 47 length of database: 1,969,620 effective HSP length: 23 effective length of query: 24 effective length of database: 1,828,515 effective search space: 43884360 effective search space used: 43884360 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 87:52.128-233 direct Length: 37 Class: 2 (36 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.317 0.139 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 139617 Number of Sequences: 6135 Number of extensions: 2888 Number of successful extensions: 14 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 36 length of database: 1,969,620 effective HSP length: 12 effective length of query: 24 effective length of database: 1,896,000 effective search space: 45504000 effective search space used: 45504000 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 88:53.0-334 direct Length: 116 Class: 2 (115 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.317 0.127 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 396789 Number of Sequences: 6135 Number of extensions: 13575 Number of successful extensions: 17 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 115 length of database: 1,969,620 effective HSP length: 39 effective length of query: 76 effective length of database: 1,730,355 effective search space: 131506980 effective search space used: 131506980 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 89:54.1-79 reverse Length: 29 Class: 2 (28 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.304 0.127 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 106921 Number of Sequences: 6135 Number of extensions: 1637 Number of successful extensions: 3 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 0 length of query: 28 length of database: 1,969,620 effective HSP length: 4 effective length of query: 24 effective length of database: 1,945,080 effective search space: 46681920 effective search space used: 46681920 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.8 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 90:55.1-240 reverse Length: 84 Class: 2 (83 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.328 0.138 0.493 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 323282 Number of Sequences: 6135 Number of extensions: 9925 Number of successful extensions: 28 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 83 length of database: 1,969,620 effective HSP length: 32 effective length of query: 51 effective length of database: 1,773,300 effective search space: 90438300 effective search space used: 90438300 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 83 (36.6 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 91:55.294-1092 direct Length: 268 Class: 2 (267 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.324 0.140 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 822019 Number of Sequences: 6135 Number of extensions: 27260 Number of successful extensions: 64 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64 Number of HSP's gapped (non-prelim): 0 length of query: 267 length of database: 1,969,620 effective HSP length: 38 effective length of query: 229 effective length of database: 1,736,490 effective search space: 397656210 effective search space used: 397656210 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 89 (38.9 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 92:56.1-100 reverse Length: 36 Class: 1 (35 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value all0087 (348 aa) <-91148 MreB: rod shape-determining protein 52 1e-008 >all0087 (348 aa) <-91148 MreB: rod shape-determining protein Length = 347 Score = 51.6 bits (122), Expect = 1e-008 Identities = 24/33 (72%), Positives = 28/33 (84%) Query: 1 MIVDIGGGTTEVAVISLGGIVTSRSIRIGGDEM 33 MI+DIGGGTTEVAV+SL G V S S+RI GDE+ Sbjct: 157 MIIDIGGGTTEVAVLSLQGTVISESVRIAGDEL 189 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.318 0.142 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 119101 Number of Sequences: 6135 Number of extensions: 2330 Number of successful extensions: 20 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 1 length of query: 35 length of database: 1,969,620 effective HSP length: 11 effective length of query: 24 effective length of database: 1,902,135 effective search space: 45651240 effective search space used: 45651240 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 93:57.1-91 reverse Length: 33 Class: 2 (32 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.311 0.123 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76393 Number of Sequences: 6135 Number of extensions: 507 Number of successful extensions: 0 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 32 length of database: 1,969,620 effective HSP length: 8 effective length of query: 24 effective length of database: 1,920,540 effective search space: 46092960 effective search space used: 46092960 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 94:57.168-599 direct Length: 144 Class: 2 (143 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.316 0.134 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 525755 Number of Sequences: 6135 Number of extensions: 19272 Number of successful extensions: 31 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 143 length of database: 1,969,620 effective HSP length: 40 effective length of query: 103 effective length of database: 1,724,220 effective search space: 177594660 effective search space used: 177594660 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 86 (37.7 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 95:57.601-657 direct Length: 19 Class: 2 (18 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.314 0.119 0.344 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50844 Number of Sequences: 6135 Number of extensions: 272 Number of successful extensions: 0 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 18 length of database: 1,969,620 effective HSP length: 0 effective length of query: 24 effective length of database: 1,969,620 effective search space: 47270880 effective search space used: 47270880 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 96:58.5-244 direct Length: 80 Class: 2 (79 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value alr4150 (257 aa) 4994192-> methionine aminopeptidase 81 3e-017 all1019 (276 aa) <-1189996 methionine aminopeptidase 72 1e-014 >alr4150 (257 aa) 4994192-> methionine aminopeptidase Length = 256 Score = 80.9 bits (198), Expect = 3e-017 Identities = 36/67 (53%), Positives = 46/67 (67%) Query: 1 VLHYGQPGQGMVLEAGMIFTIEPMLNAGKAATRELADGWTVITNDKSLSAQWEHMVVVTD 60 V HYG G+G L GM+FTIEPM+N G L DGWT +T D+ LSAQ+EH +VVT+ Sbjct: 185 VPHYGTRGKGKRLRPGMVFTIEPMINEGTYEVEMLGDGWTAVTRDRKLSAQFEHTIVVTE 244 Query: 61 TGFDVLT 67 G ++LT Sbjct: 245 DGVEILT 251 >all1019 (276 aa) <-1189996 methionine aminopeptidase Length = 275 Score = 72.0 bits (175), Expect = 1e-014 Identities = 33/55 (60%), Positives = 42/55 (76%) Query: 13 LEAGMIFTIEPMLNAGKAATRELADGWTVITNDKSLSAQWEHMVVVTDTGFDVLT 67 L AGM IEP+LNAG TR L+D WT +T D SLSAQ+EH V+VT+TG+++LT Sbjct: 216 LRAGMTLAIEPILNAGSKHTRTLSDRWTAVTVDNSLSAQFEHTVLVTETGYEILT 270 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.317 0.134 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 320694 Number of Sequences: 6135 Number of extensions: 10952 Number of successful extensions: 33 Number of sequences better than 1.0e-003: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 2 length of query: 79 length of database: 1,969,620 effective HSP length: 38 effective length of query: 41 effective length of database: 1,736,490 effective search space: 71196090 effective search space used: 71196090 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 82 (36.2 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 97:58.247-548 direct Length: 105 Class: 2 (104 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value all0285 (107 aa) <-322937 multidrug exporter 67 8e-013 >all0285 (107 aa) <-322937 multidrug exporter Length = 106 Score = 67.0 bits (162), Expect = 8e-013 Identities = 27/68 (39%), Positives = 49/68 (71%) Query: 1 MASNYLYLGLAIVAEVAATSCLKQSEGFTRLWPSVVTVLGYALAFYFLSLTLRTVPTGVA 60 M+++ +YL +AI+ EV+ T+C+K S+GF +L PS++ + Y L F F +L+L+ + +A Sbjct: 1 MSTSLVYLLIAIIFEVSGTTCMKLSDGFNKLTPSILIFVFYGLCFTFQTLSLKNIDISIA 60 Query: 61 YAIWSGAG 68 Y++W+G G Sbjct: 61 YSVWAGLG 68 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.322 0.138 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 348547 Number of Sequences: 6135 Number of extensions: 12334 Number of successful extensions: 44 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 1 length of query: 104 length of database: 1,969,620 effective HSP length: 38 effective length of query: 66 effective length of database: 1,736,490 effective search space: 114608340 effective search space used: 114608340 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 98:59.1-52 reverse Length: 20 Class: 2 (19 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.320 0.136 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61273 Number of Sequences: 6135 Number of extensions: 614 Number of successful extensions: 1 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 19 length of database: 1,969,620 effective HSP length: 0 effective length of query: 24 effective length of database: 1,969,620 effective search space: 47270880 effective search space used: 47270880 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 99:60.35-175 direct Length: 47 Class: 2 (46 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.317 0.139 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 178086 Number of Sequences: 6135 Number of extensions: 4310 Number of successful extensions: 10 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 46 length of database: 1,969,620 effective HSP length: 22 effective length of query: 24 effective length of database: 1,834,650 effective search space: 44031600 effective search space used: 44031600 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 100:61.1-333 reverse Length: 115 Class: 2 (114 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.319 0.134 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 420247 Number of Sequences: 6135 Number of extensions: 14962 Number of successful extensions: 49 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 0 length of query: 114 length of database: 1,969,620 effective HSP length: 42 effective length of query: 72 effective length of database: 1,711,950 effective search space: 123260400 effective search space used: 123260400 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 101:64.14-163 reverse Length: 50 Class: 1 (49 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.312 0.125 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 207993 Number of Sequences: 6135 Number of extensions: 5100 Number of successful extensions: 11 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 49 length of database: 1,969,620 effective HSP length: 25 effective length of query: 24 effective length of database: 1,816,245 effective search space: 43589880 effective search space used: 43589880 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 102:64.233-385 reverse Length: 51 Class: 2 (50 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.317 0.133 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 184786 Number of Sequences: 6135 Number of extensions: 4575 Number of successful extensions: 7 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 50 length of database: 1,969,620 effective HSP length: 26 effective length of query: 24 effective length of database: 1,810,110 effective search space: 43442640 effective search space used: 43442640 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 103:65.676-972 reverse Length: 99 Class: 1 (98 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value all3613 (649 aa) <-4364971 unknown protein 152 1e-038 alr2691 (675 aa) 3282086-> unknown protein 87 7e-019 >all3613 (649 aa) <-4364971 unknown protein Length = 648 Score = 152 bits (383), Expect = 1e-038 Identities = 80/99 (80%), Positives = 87/99 (87%), Gaps = 1/99 (1%) Query: 1 LGQYVDRLLAKEIVAITQTYKAGSIVLPKLGDMREQVQSEIQAKAEQK-SDLIEVQQKYS 59 LGQYVDRLLAKEIVAI QTYKAGSIVLPKLGD+RE VQSEIQA AE K E+QQKY+ Sbjct: 528 LGQYVDRLLAKEIVAIAQTYKAGSIVLPKLGDIREIVQSEIQAIAEAKCPSSSEIQQKYA 587 Query: 60 KQYRVSVHQWSYGRLIASIRSSAAKVGIVIEESKQPIRG 98 KQYRV+VHQWSYGRLI SI+S AA++GIVIEE KQPIRG Sbjct: 588 KQYRVNVHQWSYGRLIQSIQSKAAQIGIVIEEGKQPIRG 626 >alr2691 (675 aa) 3282086-> unknown protein Length = 674 Score = 86.7 bits (213), Expect = 7e-019 Identities = 49/91 (53%), Positives = 61/91 (66%), Gaps = 1/91 (1%) Query: 1 LGQYVDRLLAKEIVAITQTYKAGSIVLPKLGDMREQVQSEIQAKAEQK-SDLIEVQQKYS 59 LG+YVD+LLAK IV + + Y+A IVLPKL DM+E S IQAKAE K + Q+ Y Sbjct: 553 LGEYVDKLLAKRIVEVAKEYQAICIVLPKLKDMKEIRTSVIQAKAETKFPGNVNAQKLYV 612 Query: 60 KQYRVSVHQWSYGRLIASIRSSAAKVGIVIE 90 K+Y VH WSY RL SI+S AA++ I IE Sbjct: 613 KEYNRQVHNWSYNRLQESIKSKAAELKISIE 643 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.314 0.130 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 318172 Number of Sequences: 6135 Number of extensions: 10038 Number of successful extensions: 49 Number of sequences better than 1.0e-003: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 2 length of query: 98 length of database: 1,969,620 effective HSP length: 46 effective length of query: 52 effective length of database: 1,687,410 effective search space: 87745320 effective search space used: 87745320 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 83 (36.6 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 104:66.41-278 direct Length: 81 Class: 2 (80 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.323 0.133 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 166797 Number of Sequences: 6135 Number of extensions: 2118 Number of successful extensions: 4 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 0 length of query: 80 length of database: 1,969,620 effective HSP length: 42 effective length of query: 38 effective length of database: 1,711,950 effective search space: 65054100 effective search space used: 65054100 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 82 (36.2 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 105:67.89-415 direct Length: 109 Class: 1 (108 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value all4201 (183 aa) <-5045182 50S ribosomal protein L6 194 4e-051 >all4201 (183 aa) <-5045182 50S ribosomal protein L6 Length = 182 Score = 194 bits (492), Expect = 4e-051 Identities = 94/97 (96%), Positives = 96/97 (98%) Query: 1 MVEGVSQGFQRRLEIQGVGYRAQVQGRNLILNMGYSHQVQIEPPDGIQFAVENNTNVIVS 60 MVEGVSQGFQRRLEIQGVGYRAQVQGRNL+LNMGYSHQVQIEPPDGIQF VENNTNVIVS Sbjct: 75 MVEGVSQGFQRRLEIQGVGYRAQVQGRNLVLNMGYSHQVQIEPPDGIQFVVENNTNVIVS 134 Query: 61 GYDKEIVGNTAAKIRAVRPPEPYKGKGIRYAGEVVRR 97 GYDKEIVGNTAAK+RAVRPPEPYKGKGIRYAGEVVRR Sbjct: 135 GYDKEIVGNTAAKVRAVRPPEPYKGKGIRYAGEVVRR 171 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.318 0.139 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 409615 Number of Sequences: 6135 Number of extensions: 15810 Number of successful extensions: 32 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 1 length of query: 108 length of database: 1,969,620 effective HSP length: 40 effective length of query: 68 effective length of database: 1,724,220 effective search space: 117246960 effective search space used: 117246960 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 84 (37.0 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 106:67.418-780 direct Length: 121 Class: 1 (120 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value all4200 (121 aa) <-5044631 50S ribosomal protein L18 226 7e-061 >all4200 (121 aa) <-5044631 50S ribosomal protein L18 Length = 120 Score = 226 bits (577), Expect = 7e-061 Identities = 113/120 (94%), Positives = 118/120 (98%) Query: 1 MKLTRRESKQRRHRRVRGKVQGSPERPRLAVFRSNEHIYAQVIDDTQHHTLVSASTVEPE 60 MKLTRRESK+RRHRRVRGKVQGSPERPRLAVFRSNEHIYAQVIDDTQHHTL +ASTVEPE Sbjct: 1 MKLTRRESKERRHRRVRGKVQGSPERPRLAVFRSNEHIYAQVIDDTQHHTLAAASTVEPE 60 Query: 61 VKSSLASGANCEASSQIGKLIAVRSLEKGITKVVFDRGGNLYHGRIKALAEAAREAGLDF 120 +KSSLASG+NCEAS+QIGKLIA RSLEKGITKVVFDRGGNLYHGRIKALAEAAREAGLDF Sbjct: 61 LKSSLASGSNCEASAQIGKLIAARSLEKGITKVVFDRGGNLYHGRIKALAEAAREAGLDF 120 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.317 0.131 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 376499 Number of Sequences: 6135 Number of extensions: 12134 Number of successful extensions: 43 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 1 length of query: 120 length of database: 1,969,620 effective HSP length: 44 effective length of query: 76 effective length of database: 1,699,680 effective search space: 129175680 effective search space used: 129175680 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 107:67.859-957 direct Length: 33 Class: 1 (32 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value all4199 (175 aa) <-5044176 30S ribosomal protein S5 62 8e-012 >all4199 (175 aa) <-5044176 30S ribosomal protein S5 Length = 174 Score = 62.4 bits (150), Expect = 8e-012 Identities = 30/31 (96%), Positives = 30/31 (96%) Query: 1 MATGRRTANRTKKEETNWQERVIQIRRVSKV 31 MATGRR ANRTKKEETNWQERVIQIRRVSKV Sbjct: 1 MATGRRKANRTKKEETNWQERVIQIRRVSKV 31 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.318 0.125 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96124 Number of Sequences: 6135 Number of extensions: 1232 Number of successful extensions: 6 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 1 length of query: 32 length of database: 1,969,620 effective HSP length: 8 effective length of query: 24 effective length of database: 1,920,540 effective search space: 46092960 effective search space used: 46092960 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 108:69.15-200 direct Length: 65 Class: 2 (64 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.322 0.133 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 186167 Number of Sequences: 6135 Number of extensions: 3627 Number of successful extensions: 4 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 0 length of query: 64 length of database: 1,969,620 effective HSP length: 34 effective length of query: 30 effective length of database: 1,761,030 effective search space: 52830900 effective search space used: 52830900 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 109:70.20-301 direct Length: 94 Class: 1 (93 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value alr1000 (361 aa) 1171949-> probable glycosyl transferase 176 5e-046 alr5307 (368 aa) 6328387-> probable glycosyl transferase 97 7e-022 all2720 (363 aa) <-3316713 hypothetical protein 55 3e-009 all0919 (430 aa) <-1064513 probable glycosyltransferase 40 1e-004 all4426 (418 aa) <-5305425 probable glucosyltransferase 37 5e-004 >alr1000 (361 aa) 1171949-> probable glycosyl transferase Length = 360 Score = 176 bits (447), Expect = 5e-046 Identities = 86/93 (92%), Positives = 89/93 (95%) Query: 1 MASGTPVIAMNLGSTTEVIAHGKTGFLCSNVEECVSAIAKVADLDRYTCREYVQNRFSLQ 60 MASGTPVIAMNLGSTTEVIAHGKTGFLCSNVEECVSAIAKVADLDRYTCREYVQNRFSLQ Sbjct: 268 MASGTPVIAMNLGSTTEVIAHGKTGFLCSNVEECVSAIAKVADLDRYTCREYVQNRFSLQ 327 Query: 61 AMTEGYEEVYRQILQQRFANNGHHRSTVALSKV 93 AMT GYEEVYRQILQ+RFA NGHHRS V L+K+ Sbjct: 328 AMTGGYEEVYRQILQERFAKNGHHRSKVGLTKI 360 >alr5307 (368 aa) 6328387-> probable glycosyl transferase Length = 367 Score = 96.7 bits (239), Expect = 7e-022 Identities = 45/83 (54%), Positives = 57/83 (68%) Query: 1 MASGTPVIAMNLGSTTEVIAHGKTGFLCSNVEECVSAIAKVADLDRYTCREYVQNRFSLQ 60 MA+GTPVI MN GS EVI GKTGF+C N EE + I +LDR CRE V+N+FS+ Sbjct: 277 MATGTPVIGMNFGSVPEVIDQGKTGFICQNYEEMIQMIPATLELDRRDCRESVENKFSVS 336 Query: 61 AMTEGYEEVYRQILQQRFANNGH 83 M +GYE VY+QI++ R NG+ Sbjct: 337 QMVDGYEAVYQQIIKDRVNLNGY 359 >all2720 (363 aa) <-3316713 hypothetical protein Length = 362 Score = 54.7 bits (130), Expect = 3e-009 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 2/76 (2%) Query: 1 MASGTPVIAMNLGSTTEVIAHGKTGFLC--SNVEECVSAIAKVADLDRYTCREYVQNRFS 58 +A G PVIA G TE++ +G+TGFL +V+ V+AI + +DR CR+ + +S Sbjct: 283 LACGVPVIAYRRGGLTEIVKNGETGFLVEPDSVDGLVNAIRSLDKIDRRACRQQAELEYS 342 Query: 59 LQAMTEGYEEVYRQIL 74 QAM + E +R I+ Sbjct: 343 QQAMGDRLEYWFRDIV 358 >all0919 (430 aa) <-1064513 probable glycosyltransferase Length = 429 Score = 39.7 bits (91), Expect = 1e-004 Identities = 27/88 (30%), Positives = 41/88 (45%), Gaps = 12/88 (13%) Query: 1 MASGTPVIAMNLGSTTEVIAHGKTGFLCSNVEECVSAIAK-VADLDRYTC---------R 50 M G PVIA G E++ G +GFL E AIAK + DL + R Sbjct: 330 MIMGLPVIATTHGGIPELVEDGISGFLVP--ERDAEAIAKKLIDLIEHPAIWSSMGRAGR 387 Query: 51 EYVQNRFSLQAMTEGYEEVYRQILQQRF 78 YV++ + + + + E+YRQ++ F Sbjct: 388 AYVESHYDMNKLNDELVEIYRQVMMNNF 415 >all4426 (418 aa) <-5305425 probable glucosyltransferase Length = 417 Score = 37.4 bits (85), Expect = 5e-004 Identities = 21/85 (24%), Positives = 40/85 (46%), Gaps = 8/85 (9%) Query: 1 MASGTPVIAMNLGSTTEVIAHGKTGFLCS--NVEECVSAIAKVADLDR------YTCREY 52 +A GTPV+A N ++I H + G+L E+ I V + ++ + RE Sbjct: 332 LACGTPVVAFNATGLKDIIDHQQNGYLAKPYEAEDFAQGINWVLENEQRLQKLSFYAREK 391 Query: 53 VQNRFSLQAMTEGYEEVYRQILQQR 77 + F+L+ Y ++++IL + Sbjct: 392 AEREFTLELQARRYSALFQEILHNK 416 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.319 0.130 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 315026 Number of Sequences: 6135 Number of extensions: 10022 Number of successful extensions: 48 Number of sequences better than 1.0e-003: 5 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 5 length of query: 93 length of database: 1,969,620 effective HSP length: 43 effective length of query: 50 effective length of database: 1,705,815 effective search space: 85290750 effective search space used: 85290750 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 83 (36.6 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 110:70.479-778 reverse Length: 100 Class: 1 (99 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters Score E Sequences producing significant alignments: (bits) Value alr2009 (460 aa) 2403018-> DnaA: chromosomal replication ini... 165 2e-042 >alr2009 (460 aa) 2403018-> DnaA: chromosomal replication initiator prot Length = 459 Score = 165 bits (417), Expect = 2e-042 Identities = 80/85 (94%), Positives = 84/85 (98%) Query: 1 MADNLDISVKDLKSNSRRREISWARQIGMYLMRQHTDLSFPRIGEEFGGKDHTTVLYSCD 60 +ADN DIS++DLKSNSRRREISWARQIGMYLMRQHTDLSFPRIGEEFGGKDHTTVLYSCD Sbjct: 368 IADNFDISIEDLKSNSRRREISWARQIGMYLMRQHTDLSFPRIGEEFGGKDHTTVLYSCD 427 Query: 61 KIAQLVESDRGLSQTLRQLSDRIKI 85 KIAQLVESDRGLSQTLRQLSDRIK+ Sbjct: 428 KIAQLVESDRGLSQTLRQLSDRIKM 452 Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.322 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 340749 Number of Sequences: 6135 Number of extensions: 11428 Number of successful extensions: 26 Number of sequences better than 1.0e-003: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 1 length of query: 99 length of database: 1,969,620 effective HSP length: 41 effective length of query: 58 effective length of database: 1,718,085 effective search space: 99648930 effective search space used: 99648930 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 83 (36.6 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 111:71.64-216 reverse Length: 51 Class: 2 (50 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.316 0.131 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 179260 Number of Sequences: 6135 Number of extensions: 4498 Number of successful extensions: 5 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 0 length of query: 50 length of database: 1,969,620 effective HSP length: 26 effective length of query: 24 effective length of database: 1,810,110 effective search space: 43442640 effective search space used: 43442640 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 80 (35.4 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 112:72.20-79 direct Length: 23 Class: 2 (22 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.321 0.142 0.509 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36484 Number of Sequences: 6135 Number of extensions: 73 Number of successful extensions: 0 Number of sequences better than 1.0e-003: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 22 length of database: 1,969,620 effective HSP length: 0 effective length of query: 24 effective length of database: 1,969,620 effective search space: 47270880 effective search space used: 47270880 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 81 (35.8 bits) BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 113:73.645-833 reverse Length: 63 Class: 2 (62 letters) Database: 7120orf.fa 6135 sequences; 1,969,620 total letters ***** No hits found ****** Database: 7120orf.fa Posted date: Apr 19, 2002 1:56 PM Number of letters in database: 1,969,620 Number of sequences in database: 6135 Lambda K H 0.319 0.131 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62