Sample Scenario: Comparison of protein sequence against database
Comparison of DG47 DNA sequence with bona fide lef
gene
DG47 sequence
1 AATATTGACGCTTTACTACATCAGTCCATCGGAAGTACGTTGTATAATAAAATATATCTG
|||||||| |||||| ||||||| ||||| |||||||| ||||| |||||||| ||| ||
M29081 (lef gene) 1831 AATATTGATGCTTTATTACATCAATCCATTGGAAGTACCTTGTACAATAAAATTTATTTG
DG47 sequence
61 TATGAAAACATGAATATAAATAACTTAACAGCAACGTTAGGTGCCGATTTAGTAGATTCC
|||||||| |||||||| |||||| | |||||||| ||||||| |||||||| ||||||
M29081 (lef gene) 1891 TATGAAAATATGAATATCAATAACCTTACAGCAACCCTAGGTGCGGATTTAGTTGATTCC
DG47 sequence
121 ACAGATAATACAAAAATTAATCGAGGTATATTCAATGAGTTCAAAAAAAATTTCAAATAC
|| |||||||| ||||||||| ||||||| |||||||| |||||||||||||||||||||
M29081 (lef gene) 1951 ACTGATAATACTAAAATTAATAGAGGTATTTTCAATGAATTCAAAAAAAATTTCAAATAT
DG47 sequence
181 AGTATTTCTA
||||||||||
M29081 (lef gene) 2011 AGTATTTCTA
169 out of 190 (89%) nucleotides identical